Literature DB >> 21729879

Bias in the case-only design applied to studies of gene-environment and gene-gene interaction: a systematic review and meta-analysis.

Jessica Dennis1, Steven Hawken, Daniel Krewski, Nick Birkett, Mihaela Gheorghe, Julia Frei, Gail McKeown-Eyssen, Julian Little.   

Abstract

BACKGROUND: The case-only study, proposed as a design specifically for assessing departure from multiplicative gene-environment and gene-gene interactions, is of considerable potential value but there are concerns about its validity. The objective of this study was to evaluate the extent and sources of bias in the case-only design by means of a systematic review and meta-regression analysis.
METHODS: The MEDLINE, CINAHL, EMBASE and PUBMED databases were searched through to 7 October 2009. Studies that assessed bias in the case-only design applied to the study of gene-environment and gene-gene interaction were identified. Qualitative comments on the sources and extent of bias were extracted. A meta-regression analysis of the ratio (IOR(CC)/IOR(CO)) of the case-control (IOR(CC)) and case-only (IOR(CO)) interaction odds ratios was conducted based on studies in which both methods were applied to the same data set.
RESULTS: The search yielded 365 unique articles of which 38 met the inclusion criteria. Potential sources of bias in the case-only design included non-independence of genotype and exposure in the source population. Meta-regression analysis, based on 24 evaluations, produced a mean IOR(CC)/IOR(CO) of 1.06 [95% confidence interval (95% CI) 0.93-1.22], suggesting that bias in case-only designs is not common in practice. The I(2) statistic indicated that 23.9% (95% uncertainty interval 0-53.9%) of the observed variation was due to heterogeneity between studies, which was not explained by any methodological characteristics of the included studies.
CONCLUSION: As understanding of the relationships between genes and environmental exposures in the population improves, the case-only design may prove to be of considerable value.

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Year:  2011        PMID: 21729879     DOI: 10.1093/ije/dyr088

Source DB:  PubMed          Journal:  Int J Epidemiol        ISSN: 0300-5771            Impact factor:   7.196


  15 in total

1.  Allowing for population stratification in case-only studies of gene-environment interaction, using genomic control.

Authors:  Pankaj Yadav; Sandra Freitag-Wolf; Wolfgang Lieb; Astrid Dempfle; Michael Krawczak
Journal:  Hum Genet       Date:  2015-08-22       Impact factor: 4.132

2.  APOE ε variants increase risk of warfarin-related intracerebral hemorrhage.

Authors:  Guido J Falcone; Farid Radmanesh; H Bart Brouwers; Thomas W K Battey; William J Devan; Valerie Valant; Miriam R Raffeld; Lennox P Chitsike; Alison M Ayres; Kristin Schwab; Joshua N Goldstein; Anand Viswanathan; Steven M Greenberg; Magdy Selim; James F Meschia; Devin L Brown; Bradford B Worrall; Scott L Silliman; David L Tirschwell; Matthew L Flaherty; Sharyl R Martini; Ranjan Deka; Alessandro Biffi; Peter Kraft; Daniel Woo; Jonathan Rosand; Christopher D Anderson
Journal:  Neurology       Date:  2014-08-22       Impact factor: 9.910

3.  Interaction of cardiac implantable electronic device and patent foramen ovale in ischemic stroke: A case-only study.

Authors:  Kolade M Agboola; Jin-Moo Lee; Xiaoyan Liu; Eric Novak; Phillip S Cuculich; Daniel H Cooper; Amit Noheria
Journal:  Pacing Clin Electrophysiol       Date:  2019-01-31       Impact factor: 1.976

4.  The role of linkage disequilibrium in case-only studies of gene-environment interactions.

Authors:  Pankaj Yadav; Sandra Freitag-Wolf; Wolfgang Lieb; Michael Krawczak
Journal:  Hum Genet       Date:  2014-10-11       Impact factor: 4.132

5.  Maternal-fetal metabolic gene-gene interactions and risk of neural tube defects.

Authors:  Philip J Lupo; Laura E Mitchell; Mark A Canfield; Gary M Shaw; Andrew F Olshan; Richard H Finnell; Huiping Zhu
Journal:  Mol Genet Metab       Date:  2013-11-18       Impact factor: 4.797

Review 6.  Challenges and opportunities in genome-wide environmental interaction (GWEI) studies.

Authors:  Hugues Aschard; Sharon Lutz; Bärbel Maus; Eric J Duell; Tasha E Fingerlin; Nilanjan Chatterjee; Peter Kraft; Kristel Van Steen
Journal:  Hum Genet       Date:  2012-07-04       Impact factor: 4.132

7.  Pathway-guided identification of gene-gene interactions.

Authors:  Xin Wang; Daowen Zhang; Jung-Ying Tzeng
Journal:  Ann Hum Genet       Date:  2014-09-17       Impact factor: 1.670

8.  Vitamin D Receptor Genotype, Vitamin D3 Supplementation, and Risk of Colorectal Adenomas: A Randomized Clinical Trial.

Authors:  Elizabeth L Barry; Janet L Peacock; Judy R Rees; Roberd M Bostick; Douglas J Robertson; Robert S Bresalier; John A Baron
Journal:  JAMA Oncol       Date:  2017-05-01       Impact factor: 31.777

9.  A case-only study of gene-environment interaction between genetic susceptibility variants in NOD2 and cigarette smoking in Crohn's disease aetiology.

Authors:  Katherine L Helbig; Michael Nothnagel; Jochen Hampe; Tobias Balschun; Susanna Nikolaus; Stefan Schreiber; Andre Franke; Ute Nöthlings
Journal:  BMC Med Genet       Date:  2012-03-14       Impact factor: 2.103

10.  Correlation of the BACH1 Pro919Ser polymorphism with breast cancer risk: A literature-based meta-analysis and meta-regression analysis.

Authors:  Jing Shi; Jianhua Tong; Shuang Cai; Xiujuan Qu; Yunpeng Liu
Journal:  Exp Ther Med       Date:  2013-06-07       Impact factor: 2.447

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