Literature DB >> 21728582

Alternate measure of information useful for DNA sequences.

Ranjan Bose1, Sonali Chouhan.   

Abstract

We propose an alternate measure of information, called superinformation, which has been found to be very effective for analyzing the coding and noncoding regions of the DNA. This superinformation is actually a measure of the "randomness of randomness." It has been found to be highly accurate in classifying coding and noncoding regions of human DNA. In the proposed method, no prior training is required. This technique exhibits higher accuracy than previously reported techniques in distinguishing between the coding and the noncoding portions of the DNA. Superinformation can also be used to analyze the untranslated regions in various genes.

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Year:  2011        PMID: 21728582     DOI: 10.1103/PhysRevE.83.051918

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

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Review 3.  Information theory applications for biological sequence analysis.

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Journal:  Brief Bioinform       Date:  2013-09-20       Impact factor: 11.622

4.  A generalized topological entropy for analyzing the complexity of DNA sequences.

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Journal:  PLoS One       Date:  2014-02-12       Impact factor: 3.240

5.  Clustering of giant virus-DNA based on variations in local entropy.

Authors:  Ranjan Bose; Gerhard Thiel; Kay Hamacher
Journal:  Viruses       Date:  2014-05-30       Impact factor: 5.048

  5 in total

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