Literature DB >> 21727141

Simple Neurite Tracer: open source software for reconstruction, visualization and analysis of neuronal processes.

Mark H Longair1, Dean A Baker, J Douglas Armstrong.   

Abstract

MOTIVATION: Advances in techniques to sparsely label neurons unlock the potential to reconstruct connectivity from 3D image stacks acquired by light microscopy. We present an application for semi-automated tracing of neurons to quickly annotate noisy datasets and construct complex neuronal topologies, which we call the Simple Neurite Tracer. AVAILABILITY: Simple Neurite Tracer is open source software, licensed under the GNU General Public Licence (GPL) and based on the public domain image processing software ImageJ. The software and further documentation are available via http://fiji.sc/Simple_Neurite_Tracer as part of the package Fiji, and can be used on Windows, Mac OS and Linux. Documentation and introductory screencasts are available at the same URL. CONTACT: longair@ini.phys.ethz.ch; longair@ini.phys.ethz.ch.

Mesh：

Year:  2011        PMID： 21727141     DOI： 10.1093/bioinformatics/btr390

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  413 in total

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3.  The natverse, a versatile toolbox for combining and analysing neuroanatomical data.

Authors:  Alexander Shakeel Bates; James D Manton; Sridhar R Jagannathan; Marta Costa; Philipp Schlegel; Torsten Rohlfing; Gregory Sxe Jefferis
Journal:  Elife       Date:  2020-04-14       Impact factor: 8.140

4.  Features of the structure, development, and activity of the zebrafish noradrenergic system explored in new CRISPR transgenic lines.

Authors:  Matthew J Farrar; Kristine E Kolkman; Joseph R Fetcho
Journal:  J Comp Neurol       Date:  2018-10-15       Impact factor: 3.215

5.  Employing an open-source tool to assess astrocyte tridimensional structure.

Authors:  Gabriela Tavares; Manuella Martins; Joana Sofia Correia; Vanessa Morais Sardinha; Sónia Guerra-Gomes; Sofia Pereira das Neves; Fernanda Marques; Nuno Sousa; João Filipe Oliveira
Journal:  Brain Struct Funct       Date:  2016-09-30       Impact factor: 3.270

6.  Neurobeachin is required postsynaptically for electrical and chemical synapse formation.

Authors:  Adam C Miller; Lisa H Voelker; Arish N Shah; Cecilia B Moens
Journal:  Curr Biol       Date:  2014-12-04       Impact factor: 10.834

7.  A Population of Navigator Neurons Is Essential for Olfactory Map Formation during the Critical Period.

Authors:  Yunming Wu; Limei Ma; Kyle Duyck; Carter C Long; Andrea Moran; Hayley Scheerer; Jillian Blanck; Allison Peak; Andrew Box; Anoja Perera; C Ron Yu
Journal:  Neuron       Date:  2018-10-25       Impact factor: 17.173

8.  Automated imaging system for fast quantitation of neurons, cell morphology and neurite morphometry in vivo and in vitro.

Authors:  Victor Tapias; J Timothy Greenamyre; Simon C Watkins
Journal:  Neurobiol Dis       Date:  2012-12-07       Impact factor: 5.996

9.  The Organization of Projections from Olfactory Glomeruli onto Higher-Order Neurons.

Authors:  James M Jeanne; Mehmet Fişek; Rachel I Wilson
Journal:  Neuron       Date:  2018-06-14       Impact factor: 17.173

10.  Calcium-based dendritic excitability and its regulation in the deep cerebellar nuclei.

Authors:  Eve R Schneider; Eugene F Civillico; Samuel S-H Wang
Journal:  J Neurophysiol       Date:  2013-02-20       Impact factor: 2.714
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