Literature DB >> 21723889

Structural stability of E. coli transketolase to temperature and pH denaturation.

Raha R F Jahromi1, Phattaraporn Morris, Ruben J Martinez-Torres, Paul A Dalby.   

Abstract

We have previously shown that the denaturation of TK with urea follows a non-aggregating though irreversible denaturation pathway in which the cofactor binding appears to become altered but without dissociating, then followed at higher urea by partial denaturation of the homodimer prior to any further unfolding or dissociation of the two monomers. Urea is not typically present during biocatalysis, whereas access to TK enzymes that retain activity at increased temperature and extreme pH would be useful for operation under conditions that increase substrate and product stability or solubility. To provide further insight into the underlying causes of its deactivation in process conditions, we have characterised the effects of temperature and pH on the structure, stability, aggregation and activity of Escherichia coli transketolase. The activity of TK was initially found to progressively improve after pre-incubation at increasing temperatures. Loss of activity at higher temperature and low pH resulted primarily from protein denaturation and subsequent irreversible aggregation. By contrast, high pH resulted in the formation of a native-like state that was only partially inactive. The apo-TK enzyme structure content also increased at pH 9 to converge on that of the holo-TK. While cofactor dissociation was previously proposed for high pH deactivation, the observed structural changes in apo-TK but not holo-TK indicate a more complex mechanism.
Copyright © 2011 Elsevier B.V. All rights reserved.

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Year:  2011        PMID: 21723889     DOI: 10.1016/j.jbiotec.2011.06.023

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  7 in total

1.  Directed evolution to re-adapt a co-evolved network within an enzyme.

Authors:  John Strafford; Panwajee Payongsri; Edward G Hibbert; Phattaraporn Morris; Sukhjeet S Batth; David Steadman; Mark E B Smith; John M Ward; Helen C Hailes; Paul A Dalby
Journal:  J Biotechnol       Date:  2011-11-29       Impact factor: 3.307

2.  Two strategies to engineer flexible loops for improved enzyme thermostability.

Authors:  Haoran Yu; Yihan Yan; Cheng Zhang; Paul A Dalby
Journal:  Sci Rep       Date:  2017-02-01       Impact factor: 4.379

3.  Coupled molecular dynamics mediate long- and short-range epistasis between mutations that affect stability and aggregation kinetics.

Authors:  Haoran Yu; Paul A Dalby
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-07       Impact factor: 11.205

4.  Novel insights into transketolase activation by cofactor binding identifies two native species subpopulations.

Authors:  Henry C Wilkinson; Paul A Dalby
Journal:  Sci Rep       Date:  2019-11-06       Impact factor: 4.379

Review 5.  Is Protein Folding a Thermodynamically Unfavorable, Active, Energy-Dependent Process?

Authors:  Irina Sorokina; Arcady R Mushegian; Eugene V Koonin
Journal:  Int J Mol Sci       Date:  2022-01-04       Impact factor: 5.923

6.  Biophysical characterization of the inactivation of E. coli transketolase by aqueous co-solvents.

Authors:  Phattaraporn Morris; Ribia García-Arrazola; Leonardo Rios-Solis; Paul A Dalby
Journal:  Sci Rep       Date:  2021-12-08       Impact factor: 4.379

7.  A 'Split-Gene' Transketolase From the Hyper-Thermophilic Bacterium Carboxydothermus hydrogenoformans: Structure and Biochemical Characterization.

Authors:  Paul James; Michail N Isupov; Simone Antonio De Rose; Christopher Sayer; Isobel S Cole; Jennifer A Littlechild
Journal:  Front Microbiol       Date:  2020-10-30       Impact factor: 5.640

  7 in total

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