Literature DB >> 21717104

Finite volume and asymptotic methods for stochastic neuron models with correlated inputs.

Robert Rosenbaum1, Fabien Marpeau, Jianfu Ma, Aditya Barua, Krešimir Josić.   

Abstract

We consider a pair of stochastic integrate and fire neurons receiving correlated stochastic inputs. The evolution of this system can be described by the corresponding Fokker-Planck equation with non-trivial boundary conditions resulting from the refractory period and firing threshold. We propose a finite volume method that is orders of magnitude faster than the Monte Carlo methods traditionally used to model such systems. The resulting numerical approximations are proved to be accurate, nonnegative and integrate to 1. We also approximate the transient evolution of the system using an Ornstein-Uhlenbeck process, and use the result to examine the properties of the joint output of cell pairs. The results suggests that the joint output of a cell pair is most sensitive to changes in input variance, and less sensitive to changes in input mean and correlation.

Mesh:

Year:  2011        PMID: 21717104     DOI: 10.1007/s00285-011-0451-3

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  35 in total

1.  Dynamics of population rate codes in ensembles of neocortical neurons.

Authors:  G Silberberg; M Bethge; H Markram; K Pawelzik; M Tsodyks
Journal:  J Neurophysiol       Date:  2004-02       Impact factor: 2.714

2.  Correlations and synchrony in threshold neuron models.

Authors:  Tatjana Tchumatchenko; Aleksey Malyshev; Theo Geisel; Maxim Volgushev; Fred Wolf
Journal:  Phys Rev Lett       Date:  2010-02-04       Impact factor: 9.161

Review 3.  A review of the integrate-and-fire neuron model: II. Inhomogeneous synaptic input and network properties.

Authors:  A N Burkitt
Journal:  Biol Cybern       Date:  2006-07-05       Impact factor: 2.086

4.  The operating point of the cortex: neurons as large deviation detectors.

Authors:  Dario L Ringach; Brian J Malone
Journal:  J Neurosci       Date:  2007-07-18       Impact factor: 6.167

5.  Stochastic dynamics of uncoupled neural oscillators: Fokker-Planck studies with the finite element method.

Authors:  Roberto F Galán; G Bard Ermentrout; Nathaniel N Urban
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-11-15

6.  A finite volume method for stochastic integrate-and-fire models.

Authors:  Fabien Marpeau; Aditya Barua; Kresimir Josić
Journal:  J Comput Neurosci       Date:  2008-12-09       Impact factor: 1.621

7.  How connectivity, background activity, and synaptic properties shape the cross-correlation between spike trains.

Authors:  Srdjan Ostojic; Nicolas Brunel; Vincent Hakim
Journal:  J Neurosci       Date:  2009-08-19       Impact factor: 6.167

8.  Schmitt trigger: A solvable model of stochastic resonance.

Authors: 
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1993-10

Review 9.  Computational models of schizophrenia and dopamine modulation in the prefrontal cortex.

Authors:  Edmund T Rolls; Marco Loh; Gustavo Deco; Georg Winterer
Journal:  Nat Rev Neurosci       Date:  2008-09       Impact factor: 34.870

Review 10.  Noise in the nervous system.

Authors:  A Aldo Faisal; Luc P J Selen; Daniel M Wolpert
Journal:  Nat Rev Neurosci       Date:  2008-04       Impact factor: 34.870

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  2 in total

1.  Complete Firing-Rate Response of Neurons with Complex Intrinsic Dynamics.

Authors:  Maximilian Puelma Touzel; Fred Wolf
Journal:  PLoS Comput Biol       Date:  2015-12-31       Impact factor: 4.475

2.  A Diffusion Approximation and Numerical Methods for Adaptive Neuron Models with Stochastic Inputs.

Authors:  Robert Rosenbaum
Journal:  Front Comput Neurosci       Date:  2016-04-22       Impact factor: 2.380

  2 in total

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