Literature DB >> 21716282

Spectral archives: a vision for future proteomics data repositories.

Henry Lam.   

Abstract

Mesh：

Substances：

Year:  2011        PMID： 21716282     DOI： 10.1038/nmeth.1633

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


× No keyword cloud information.
  12 in total

Review 1.  Mass spectrometry-based proteomics.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

Review 2.  The ABC's (and XYZ's) of peptide sequencing.

Authors:  Hanno Steen; Matthias Mann
Journal:  Nat Rev Mol Cell Biol       Date:  2004-09       Impact factor: 94.444

Review 3.  Computational analysis of shotgun proteomics data.

Authors:  Michael J MacCoss
Journal:  Curr Opin Chem Biol       Date:  2005-02       Impact factor: 8.822

4.  PRIDE: the proteomics identifications database.

Authors:  Lennart Martens; Henning Hermjakob; Philip Jones; Marcin Adamski; Chris Taylor; David States; Kris Gevaert; Joël Vandekerckhove; Rolf Apweiler
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

5.  Using annotated peptide mass spectrum libraries for protein identification.

Authors:  R Craig; J C Cortens; D Fenyo; R C Beavis
Journal:  J Proteome Res       Date:  2006-08       Impact factor: 4.466

6.  Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries.

Authors:  Barbara E Frewen; Gennifer E Merrihew; Christine C Wu; William Stafford Noble; Michael J MacCoss
Journal:  Anal Chem       Date:  2006-08-15       Impact factor: 6.986

7.  Development and validation of a spectral library searching method for peptide identification from MS/MS.

Authors:  Henry Lam; Eric W Deutsch; James S Eddes; Jimmy K Eng; Nichole King; Stephen E Stein; Ruedi Aebersold
Journal:  Proteomics       Date:  2007-03       Impact factor: 3.984

Review 8.  PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows.

Authors:  Eric W Deutsch; Henry Lam; Ruedi Aebersold
Journal:  EMBO Rep       Date:  2008-05       Impact factor: 8.807

9.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Eric W Sayers
Journal:  Nucleic Acids Res       Date:  2010-11-10       Impact factor: 16.971

10.  Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra.

Authors:  Ari M Frank; Matthew E Monroe; Anuj R Shah; Jeremy J Carver; Nuno Bandeira; Ronald J Moore; Gordon A Anderson; Richard D Smith; Pavel A Pevzner
Journal:  Nat Methods       Date:  2011-05-15       Impact factor: 28.547
View more
  3 in total

1.  Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas.

Authors:  Jayantha Gunaratne; Alexander Schmidt; Andreas Quandt; Suat Peng Neo; Omer Sinan Saraç; Tannia Gracia; Salvatore Loguercio; Erik Ahrné; Rachel Li Hai Xia; Keng Hwa Tan; Christopher Lössner; Jürg Bähler; Andreas Beyer; Walter Blackstock; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2013-03-05       Impact factor: 5.911

2.  Recognizing millions of consistently unidentified spectra across hundreds of shotgun proteomics datasets.

Authors:  Johannes Griss; Yasset Perez-Riverol; Steve Lewis; David L Tabb; José A Dianes; Noemi Del-Toro; Marc Rurik; Mathias W Walzer; Oliver Kohlbacher; Henning Hermjakob; Rui Wang; Juan Antonio Vizcaíno
Journal:  Nat Methods       Date:  2016-06-27       Impact factor: 28.547

Review 3.  Exploring the potential of public proteomics data.

Authors:  Marc Vaudel; Kenneth Verheggen; Attila Csordas; Helge Raeder; Frode S Berven; Lennart Martens; Juan A Vizcaíno; Harald Barsnes
Journal:  Proteomics       Date:  2015-12-15       Impact factor: 3.984
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.