Literature DB >> 21715864

Forward flux sampling for rare event simulations.

Rosalind J Allen1, Chantal Valeriani, Pieter Rein Ten Wolde.   

Abstract

Rare events are ubiquitous in many different fields, yet they are notoriously difficult to simulate because few, if any, events are observed in a conventional simulation run. Over the past several decades, specialized simulation methods have been developed to overcome this problem. We review one recently developed class of such methods, known as forward flux sampling. Forward flux sampling uses a series of interfaces between the initial and final states to calculate rate constants and generate transition paths for rare events in equilibrium or nonequilibrium systems with stochastic dynamics. This review draws together a number of recent advances, summarizes several applications of the method and highlights challenges that remain to be overcome.

Year:  2009        PMID: 21715864     DOI: 10.1088/0953-8984/21/46/463102

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  42 in total

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Journal:  PLoS One       Date:  2020-03-11       Impact factor: 3.240

8.  Modelling toehold-mediated RNA strand displacement.

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9.  Effect of material flexibility on the thermodynamics and kinetics of hydrophobically induced evaporation of water.

Authors:  Y Elia Altabet; Amir Haji-Akbari; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-13       Impact factor: 11.205

10.  Universal folding pathways of polyhedron nets.

Authors:  Paul M Dodd; Pablo F Damasceno; Sharon C Glotzer
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-03       Impact factor: 11.205

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