Literature DB >> 21714539

Utilization of halogen bond in lead optimization: a case study of rational design of potent phosphodiesterase type 5 (PDE5) inhibitors.

Zhijian Xu1, Zheng Liu, Tong Chen, TianTian Chen, Zhen Wang, Guanghui Tian, Jing Shi, Xuelan Wang, Yunxiang Lu, Xiuhua Yan, Guan Wang, Hualiang Jiang, Kaixian Chen, Shudong Wang, Yechun Xu, Jingshan Shen, Weiliang Zhu.   

Abstract

For proof-of-concept of halogen bonding in drug design, a series of halogenated compounds were designed based on a lead structure as new inhibitors of phosphodiesterase type 5. Bioassay results revealed a good correlation between the measured bioactivity and the calculated halogen bond energy. Our X-ray crystal structures verified the existence of the predicted halogen bonds, demonstrating that the halogen bond is an applicable tool in drug design and should be routinely considered in lead optimization.

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Year:  2011        PMID: 21714539     DOI: 10.1021/jm200644r

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  19 in total

1.  Synthesis and evaluation of aryl-naloxamide opiate analgesics targeting truncated exon 11-associated μ opioid receptor (MOR-1) splice variants.

Authors:  Susruta Majumdar; Joan Subrath; Valerie Le Rouzic; Lisa Polikar; Maxim Burgman; Kuni Nagakura; Julie Ocampo; Nathan Haselton; Anna R Pasternak; Steven Grinnell; Ying-Xian Pan; Gavril W Pasternak
Journal:  J Med Chem       Date:  2012-07-16       Impact factor: 7.446

2.  A quantum mechanics-based halogen bonding scoring function for protein-ligand interactions.

Authors:  Zhuo Yang; Yingtao Liu; Zhaoqiang Chen; Zhijian Xu; Jiye Shi; Kaixian Chen; Weiliang Zhu
Journal:  J Mol Model       Date:  2015-05-10       Impact factor: 1.810

3.  Discovering protein-ligand chalcogen bonding in the protein data bank using endocyclic sulfur-containing heterocycles as ligand search subsets.

Authors:  Miguel O Mitchell
Journal:  J Mol Model       Date:  2017-09-24       Impact factor: 1.810

4.  Molecular dynamics simulation of halogen bonding mimics experimental data for cathepsin L inhibition.

Authors:  Cristian Celis-Barros; Leslie Saavedra-Rivas; J Cristian Salgado; Bruce K Cassels; Gerald Zapata-Torres
Journal:  J Comput Aided Mol Des       Date:  2014-10-22       Impact factor: 3.686

5.  A knowledge-based halogen bonding scoring function for predicting protein-ligand interactions.

Authors:  Yingtao Liu; Zhijian Xu; Zhuo Yang; Kaixian Chen; Weiliang Zhu
Journal:  J Mol Model       Date:  2013-09-27       Impact factor: 1.810

6.  Preparation and Characterization of Tetrabromopyrrole Debrominase From Marine Proteobacteria.

Authors:  Jonathan R Chekan; Bradley S Moore
Journal:  Methods Enzymol       Date:  2018-03-16       Impact factor: 1.600

7.  Modulation of the Interaction between a Peptide Ligand and a G Protein-Coupled Receptor by Halogen Atoms.

Authors:  Mònica Rosa; Gianluigi Caltabiano; Katy Barreto-Valer; Verónica Gonzalez-Nunez; José C Gómez-Tamayo; Ana Ardá; Jesús Jiménez-Barbero; Leonardo Pardo; Raquel E Rodríguez; Gemma Arsequell; Gregorio Valencia
Journal:  ACS Med Chem Lett       Date:  2015-07-16       Impact factor: 4.345

8.  Using halogen bonds to address the protein backbone: a systematic evaluation.

Authors:  Rainer Wilcken; Markus O Zimmermann; Andreas Lange; Stefan Zahn; Frank M Boeckler
Journal:  J Comput Aided Mol Des       Date:  2012-08-04       Impact factor: 3.686

9.  Exploring Halogen Bonds in 5-Hydroxytryptamine 2B Receptor-Ligand Interactions.

Authors:  Yu Zhou; Yuanxun Wang; Pengfei Li; Xi-Ping Huang; Xiangbin Qi; Yunfei Du; Niu Huang
Journal:  ACS Med Chem Lett       Date:  2018-10-01       Impact factor: 4.345

10.  Exploring the PDE5 H-pocket by ensemble docking and structure-based design and synthesis of novel β-carboline derivatives.

Authors:  Nermin S Ahmed; Amal H Ali; Shreen M El-Nashar; Bernard D Gary; Alexandra M Fajardo; Heather N Tinsley; Gary A Piazza; Matthias Negri; Ashraf H Abadi
Journal:  Eur J Med Chem       Date:  2012-09-29       Impact factor: 6.514

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