Literature DB >> 21712727

Computational approaches for translational clinical research in disease progression.

Mary F McGuire1, Madurai Sriram Iyengar, David W Mercer.   

Abstract

Today, there is an ever-increasing amount of biological and clinical data available that could be used to enhance a systems-based understanding of disease progression through innovative computational analysis. In this article, we review a selection of published research regarding computational methods, primarily from systems biology, which support translational research from the molecular level to the bedside, with a focus on applications in trauma and critical care. Trauma is the leading cause of mortality in Americans younger than 45 years, and its rapid progression offers both opportunities and challenges for computational analysis of trends in molecular patterns associated with outcomes and therapeutic interventions.This review presents methods and domain-specific examples that may inspire the development of new algorithms and computational methods that use both molecular and clinical data for diagnosis, prognosis, and therapy in disease progression.

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Year:  2011        PMID: 21712727      PMCID: PMC3196807          DOI: 10.2310/JIM.0b013e318224d8cc

Source DB:  PubMed          Journal:  J Investig Med        ISSN: 1081-5589            Impact factor:   2.895


  95 in total

Review 1.  Physiology and immunology of the cholinergic antiinflammatory pathway.

Authors:  Kevin J Tracey
Journal:  J Clin Invest       Date:  2007-02       Impact factor: 14.808

2.  [Not Available].

Authors:  M MONNIER; F BOEHM
Journal:  Helv Physiol Pharmacol Acta       Date:  1947

3.  Use of an artificial neural network to predict head injury outcome.

Authors:  Anand I Rughani; Travis M Dumont; Zhenyu Lu; Josh Bongard; Michael A Horgan; Paul L Penar; Bruce I Tranmer
Journal:  J Neurosurg       Date:  2010-09       Impact factor: 5.115

4.  Characterization of patient specific signaling via augmentation of Bayesian networks with disease and patient state nodes.

Authors:  Karen Sachs; Andrew J Gentles; Ryan Youland; Solomon Itani; Jonathan Irish; Garry P Nolan; Sylvia K Plevritis
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2009

5.  Agent-based modeling of endotoxin-induced acute inflammatory response in human blood leukocytes.

Authors:  Xu Dong; Panagiota T Foteinou; Steven E Calvano; Stephen F Lowry; Ioannis P Androulakis
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

Review 6.  Systemic cancer therapy: evolution over the last 60 years.

Authors:  Grace K Dy; Alex A Adjei
Journal:  Cancer       Date:  2008-10-01       Impact factor: 6.860

7.  Rapid prediction of trauma patient survival by analysis of heart rate complexity: impact of reducing data set size.

Authors:  Andriy I Batchinsky; Jose Salinas; Tom Kuusela; Corina Necsoiu; John Jones; Leopoldo C Cancio
Journal:  Shock       Date:  2009-12       Impact factor: 3.454

Review 8.  Multiple organ failure. Pathophysiology and potential future therapy.

Authors:  E A Deitch
Journal:  Ann Surg       Date:  1992-08       Impact factor: 12.969

9.  Bridging the gap between systems biology and medicine.

Authors:  Gilles Clermont; Charles Auffray; Yves Moreau; David M Rocke; Daniel Dalevi; Devdatt Dubhashi; Dana R Marshall; Peter Raasch; Frank Dehne; Paolo Provero; Jesper Tegner; Bruce J Aronow; Michael A Langston; Mikael Benson
Journal:  Genome Med       Date:  2009-09-29       Impact factor: 11.117

10.  Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology.

Authors:  Chung-Yen Lin; Chia-Hao Chin; Hsin-Hung Wu; Shu-Hwa Chen; Chin-Wen Ho; Ming-Tat Ko
Journal:  Nucleic Acids Res       Date:  2008-05-24       Impact factor: 16.971

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  5 in total

1.  Data driven linear algebraic methods for analysis of molecular pathways: application to disease progression in shock/trauma.

Authors:  Mary F McGuire; M Sriram Iyengar; David W Mercer
Journal:  J Biomed Inform       Date:  2011-12-17       Impact factor: 6.317

2.  Formalizing an integrative, multidisciplinary cancer therapy discovery workflow.

Authors:  Mary F McGuire; Heiko Enderling; Dorothy I Wallace; Jaspreet Batra; Marie Jordan; Sushil Kumar; John C Panetta; Eddy Pasquier
Journal:  Cancer Res       Date:  2013-08-16       Impact factor: 12.701

3.  A Chemical Engineer's Perspective on Health and Disease.

Authors:  Ioannis P Androulakis
Journal:  Comput Chem Eng       Date:  2014-12-04       Impact factor: 3.845

4.  Live sequence charts to model medical information.

Authors:  Eric Aslakson; Smadar Szekely; Suzanne D Vernon; Lucinda Bateman; Jan Baumbach; Yaki Setty
Journal:  Theor Biol Med Model       Date:  2012-06-15       Impact factor: 2.432

Review 5.  A Systems Engineering Perspective on Homeostasis and Disease.

Authors:  Yoram Vodovotz; Gary An; Ioannis P Androulakis
Journal:  Front Bioeng Biotechnol       Date:  2013-09-09
  5 in total

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