Literature DB >> 21712652

Developmental functions of piRNAs and transposable elements: a Drosophila point-of-view.

Martine Simonelig1.   

Abstract

The primary function of the piRNA pathway is to repress the expression and transposition of transposable elements. However, the piRNA pathway has additional biological and developmental functions. These functions are either a consequence of transposon regulation, or they result from direct roles of transposable elements in chromosome structure and gene regulation through piRNAs. Recent data have extended the functions of transposable elements in gene regulation, revealing a trans-acting role of transposable element piRNAs in the control of gene expression. Over the last few years, extensive studies on the piRNA pathway have rapidly increased our understanding of the relationships between transposable elements and the host genome, and of the essential role of transposable elements in biological and developmental processes.

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Year:  2011        PMID: 21712652      PMCID: PMC3256352          DOI: 10.4161/rna.8.5.16042

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  77 in total

1.  Drosophila rasiRNA pathway mutations disrupt embryonic axis specification through activation of an ATR/Chk2 DNA damage response.

Authors:  Carla Klattenhoff; Diana P Bratu; Nadine McGinnis-Schultz; Birgit S Koppetsch; Heather A Cook; William E Theurkauf
Journal:  Dev Cell       Date:  2007-01       Impact factor: 12.270

2.  SMAUG is a major regulator of maternal mRNA destabilization in Drosophila and its translation is activated by the PAN GU kinase.

Authors:  Wael Tadros; Aaron L Goldman; Tomas Babak; Fiona Menzies; Leah Vardy; Terry Orr-Weaver; Timothy R Hughes; J Timothy Westwood; Craig A Smibert; Howard D Lipshitz
Journal:  Dev Cell       Date:  2007-01       Impact factor: 12.270

3.  The RNA interference proteins and vasa locus are involved in the silencing of retrotransposons in the female germline of Drosophila melanogaster.

Authors:  Vasily V Vagin; Mikhail S Klenov; Alla I Kalmykova; Anastasia D Stolyarenko; Roman N Kotelnikov; Vladimir A Gvozdev
Journal:  RNA Biol       Date:  2004-05-21       Impact factor: 4.652

4.  Oskar allows nanos mRNA translation in Drosophila embryos by preventing its deadenylation by Smaug/CCR4.

Authors:  Sophie Zaessinger; Isabelle Busseau; Martine Simonelig
Journal:  Development       Date:  2006-10-18       Impact factor: 6.868

5.  A novel repeat-associated small interfering RNA-mediated silencing pathway downregulates complementary sense gypsy transcripts in somatic cells of the Drosophila ovary.

Authors:  Alain Pélisson; Emeline Sarot; Geneviève Payen-Groschêne; Alain Bucheton
Journal:  J Virol       Date:  2006-11-29       Impact factor: 5.103

6.  A slicer-mediated mechanism for repeat-associated siRNA 5' end formation in Drosophila.

Authors:  Lalith S Gunawardane; Kuniaki Saito; Kazumichi M Nishida; Keita Miyoshi; Yoshinori Kawamura; Tomoko Nagami; Haruhiko Siomi; Mikiko C Siomi
Journal:  Science       Date:  2007-02-22       Impact factor: 47.728

7.  Cutoff and aubergine mutations result in retrotransposon upregulation and checkpoint activation in Drosophila.

Authors:  Yu Chen; Attilio Pane; Trudi Schüpbach
Journal:  Curr Biol       Date:  2007-03-15       Impact factor: 10.834

8.  Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster.

Authors:  Ai Khim Lim; Toshie Kai
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-11       Impact factor: 11.205

9.  Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila.

Authors:  Julius Brennecke; Alexei A Aravin; Alexander Stark; Monica Dus; Manolis Kellis; Ravi Sachidanandam; Gregory J Hannon
Journal:  Cell       Date:  2007-03-08       Impact factor: 41.582

10.  piRNAs mediate posttranscriptional retroelement silencing and localization to pi-bodies in the Drosophila germline.

Authors:  Ai Khim Lim; Liheng Tao; Toshie Kai
Journal:  J Cell Biol       Date:  2009-08-03       Impact factor: 10.539

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  10 in total

Review 1.  Male germline control of transposable elements.

Authors:  Jianqiang Bao; Wei Yan
Journal:  Biol Reprod       Date:  2012-05-31       Impact factor: 4.285

2.  Could interallelic interactions be a key to the epigenetic aspects of fitness-trait inbreeding depression?

Authors:  C Biémont; C Vieira
Journal:  Heredity (Edinb)       Date:  2013-10-09       Impact factor: 3.821

3.  Do human transposable element small RNAs serve primarily as genome defenders or genome regulators?

Authors:  Kevin J Lee; Andrew B Conley; Victoria V Lunyak; I King Jordan
Journal:  Mob Genet Elements       Date:  2012-01-01

4.  Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly.

Authors:  Benjamin J Blackwell; Mary F Lopez; Jianrong Wang; Bryan Krastins; David Sarracino; James R Tollervey; Marek Dobke; I King Jordan; Victoria V Lunyak
Journal:  Mob Genet Elements       Date:  2012-01-01

Review 5.  The intertwining of transposable elements and non-coding RNAs.

Authors:  Michael Hadjiargyrou; Nicholas Delihas
Journal:  Int J Mol Sci       Date:  2013-06-26       Impact factor: 5.923

Review 6.  Argonaute-dependent small RNAs derived from single-stranded, non-structured precursors.

Authors:  Li-Ling Chak; Katsutomo Okamura
Journal:  Front Genet       Date:  2014-06-10       Impact factor: 4.599

Review 7.  Transposable Elements in Human Cancer: Causes and Consequences of Deregulation.

Authors:  Sumadi Lukman Anwar; Wahyu Wulaningsih; Ulrich Lehmann
Journal:  Int J Mol Sci       Date:  2017-05-04       Impact factor: 5.923

8.  Genome-wide profiling of piRNAs in the whitefly Bemisia tabaci reveals cluster distribution and association with begomovirus transmission.

Authors:  Md Shamimuzzaman; Daniel K Hasegawa; Wenbo Chen; Alvin M Simmons; Zhangjun Fei; Kai-Shu Ling
Journal:  PLoS One       Date:  2019-03-12       Impact factor: 3.240

9.  Novel features of a PIWI-like protein homolog in the parasitic protozoan Leishmania.

Authors:  Prasad K Padmanabhan; Carole Dumas; Mukesh Samant; Annie Rochette; Martin J Simard; Barbara Papadopoulou
Journal:  PLoS One       Date:  2012-12-21       Impact factor: 3.240

10.  Developmental piRNA profiles of the invasive vector mosquito Aedes albopictus.

Authors:  Peiwen Liu; Yunqiao Dong; Jinbao Gu; Santhosh Puthiyakunnon; Yang Wu; Xiao-Guang Chen
Journal:  Parasit Vectors       Date:  2016-09-29       Impact factor: 3.876

  10 in total

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