Literature DB >> 21708283

Informatics and computational strategies for the study of lipids.

Matej Orešič1.   

Abstract

The ability to translate vast amounts of information, as obtained from lipidomic analysis, into the knowledge and understanding of biological phenomena is an important challenge faced by the lipidomics community. While many of the informatics and computational tools from other domains such as bioinformatics and metabolomics are also applicable to lipidomics data processing and analysis, new solutions and strategies are needed for the studies of lipidomes at the systems level. This is due to enormous functional and structural diversity of lipids as well as because of their complex regulation at multiple spatial and temporal scales. In order to better understand the lipidomes at the physiological level, lipids need to be modeled not only at the level of biological pathways but also at the level of the biophysical systems they are part of, such as cellular membranes or lipoprotein particles. Herein the current state, recent advances and new opportunities in the field of lipid bioinformatics are reviewed.
Copyright © 2011 Elsevier B.V. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21708283     DOI: 10.1016/j.bbalip.2011.06.012

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  7 in total

1.  LipidFinder: A computational workflow for discovery of lipids identifies eicosanoid-phosphoinositides in platelets.

Authors:  Anne O'Connor; Christopher J Brasher; David A Slatter; Sven W Meckelmann; Jade I Hawksworth; Stuart M Allen; Valerie B O'Donnell
Journal:  JCI Insight       Date:  2017-04-06

Review 2.  Visualizing bioactive ceramides.

Authors:  Daniel Canals; Silvia Salamone; Yusuf A Hannun
Journal:  Chem Phys Lipids       Date:  2018-09-25       Impact factor: 3.329

Review 3.  Principles and practice of lipidomics.

Authors:  Frédéric M Vaz; Mia Pras-Raves; Albert H Bootsma; Antoine H C van Kampen
Journal:  J Inherit Metab Dis       Date:  2014-11-20       Impact factor: 4.982

Review 4.  Unraveling the complexities of the HDL lipidome.

Authors:  Anatol Kontush; Marie Lhomme; M John Chapman
Journal:  J Lipid Res       Date:  2013-03-30       Impact factor: 5.922

Review 5.  Interpreting the lipidome: bioinformatic approaches to embrace the complexity.

Authors:  Jennifer E Kyle; Lucila Aimo; Alan J Bridge; Geremy Clair; Maria Fedorova; J Bernd Helms; Martijn R Molenaar; Zhixu Ni; Matej Orešič; Denise Slenter; Egon Willighagen; Bobbie-Jo M Webb-Robertson
Journal:  Metabolomics       Date:  2021-06-06       Impact factor: 4.290

6.  Statistical analysis of the processes controlling choline and ethanolamine glycerophospholipid molecular species composition.

Authors:  Kourosh Zarringhalam; Lu Zhang; Michael A Kiebish; Kui Yang; Xianlin Han; Richard W Gross; Jeffrey Chuang
Journal:  PLoS One       Date:  2012-05-25       Impact factor: 3.240

Review 7.  Advances about the Roles of Membranes in Cotton Fiber Development.

Authors:  Fan Xu; Qian Chen; Li Huang; Ming Luo
Journal:  Membranes (Basel)       Date:  2021-06-25
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.