Literature DB >> 21705612

Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease.

Takayasu Watanabe1, Fumito Maruyama, Takashi Nozawa, Akinobu Aoki, Soichiro Okano, Yasuko Shibata, Kenshiro Oshima, Ken Kurokawa, Masahira Hattori, Ichiro Nakagawa, Yoshimitsu Abiko.   

Abstract

Porphyromonas gingivalis is a black-pigmented asaccharolytic anaerobe and a major causative agent of periodontitis. Here, we report the complete genome sequence of P. gingivalis strain TDC60, which was recently isolated from a severe periodontal lesion in a Japanese patient.

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Year:  2011        PMID： 21705612      PMCID： PMC3147703          DOI： 10.1128/JB.05269-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 2.  Microbial etiological agents of destructive periodontal diseases.

Authors:  A D Haffajee; S S Socransky
Journal:  Periodontol 2000       Date:  1994-06       Impact factor: 7.589

3.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Comparative genomics of BCG vaccines by whole-genome DNA microarray.

Authors:  M A Behr; M A Wilson; W P Gill; H Salamon; G K Schoolnik; S Rane; P M Small
Journal:  Science       Date:  1999-05-28       Impact factor: 47.728

5.  Complete genome sequence of the oral pathogenic Bacterium porphyromonas gingivalis strain W83.

Authors:  Karen E Nelson; Robert D Fleischmann; Robert T DeBoy; Ian T Paulsen; Derrick E Fouts; Jonathan A Eisen; Sean C Daugherty; Robert J Dodson; A Scott Durkin; Michelle Gwinn; Daniel H Haft; James F Kolonay; William C Nelson; Tanya Mason; Luke Tallon; Jessica Gray; David Granger; Hervé Tettelin; Hong Dong; Jamie L Galvin; Margaret J Duncan; Floyd E Dewhirst; Claire M Fraser
Journal:  J Bacteriol       Date:  2003-09       Impact factor: 3.490

6.  ISfinder: the reference centre for bacterial insertion sequences.

Authors:  P Siguier; J Perochon; L Lestrade; J Mahillon; M Chandler
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

7.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

8.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

9.  CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.

Authors:  Ibtissem Grissa; Gilles Vergnaud; Christine Pourcel
Journal:  Nucleic Acids Res       Date:  2007-05-30       Impact factor: 16.971

10.  GenomeMatcher: a graphical user interface for DNA sequence comparison.

Authors:  Yoshiyuki Ohtsubo; Wakako Ikeda-Ohtsubo; Yuji Nagata; Masataka Tsuda
Journal:  BMC Bioinformatics       Date:  2008-09-16       Impact factor: 3.169
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  25 in total

1.  A Porphyromonas gingivalis Periplasmic Novel Exopeptidase, Acylpeptidyl Oligopeptidase, Releases N-Acylated Di- and Tripeptides from Oligopeptides.

Authors:  Takayuki K Nemoto; Yuko Ohara-Nemoto; Gustavo Arruda Bezerra; Yu Shimoyama; Shigenobu Kimura
Journal:  J Biol Chem       Date:  2016-01-05       Impact factor: 5.157

Review 2.  Genetic diversity in the oral pathogen Porphyromonas gingivalis: molecular mechanisms and biological consequences.

Authors:  Gena D Tribble; Jennifer E Kerr; Bing-Yan Wang
Journal:  Future Microbiol       Date:  2013-05       Impact factor: 3.165

3.  Identification of the linkage between A-polysaccharide and the core in the A-lipopolysaccharide of Porphyromonas gingivalis W50.

Authors:  Nikolay Paramonov; Joseph Aduse-Opoku; Ahmed Hashim; Minnie Rangarajan; Michael A Curtis
Journal:  J Bacteriol       Date:  2015-03-02       Impact factor: 3.490

4.  Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.

Authors:  Jeffrey S McLean; Mary-Jane Lombardo; Michael G Ziegler; Mark Novotny; Joyclyn Yee-Greenbaum; Jonathan H Badger; Glenn Tesler; Sergey Nurk; Valery Lesin; Daniel Brami; Adam P Hall; Anna Edlund; Lisa Z Allen; Scott Durkin; Sharon Reed; Francesca Torriani; Kenneth H Nealson; Pavel A Pevzner; Robert Friedman; J Craig Venter; Roger S Lasken
Journal:  Genome Res       Date:  2013-04-05       Impact factor: 9.043

5.  Porphyromonas gingivalis FimA fimbriae: fimbrial assembly by fimA alone in the fim gene cluster and differential antigenicity among fimA genotypes.

Authors:  Keiji Nagano; Yoshiaki Hasegawa; Yuki Abiko; Yasuo Yoshida; Yukitaka Murakami; Fuminobu Yoshimura
Journal:  PLoS One       Date:  2012-09-07       Impact factor: 3.240

6.  Prevalence and quantitative analysis of Epstein-Barr virus DNA and Porphyromonas gingivalis associated with Japanese chronic periodontitis patients.

Authors:  Ayako Kato; Kenichi Imai; Kuniyasu Ochiai; Yorimasa Ogata
Journal:  Clin Oral Investig       Date:  2014-12-18       Impact factor: 3.573

7.  Genome Sequence of Porphyromonas gingivalis Strain A7436.

Authors:  Ryan P Chastain-Gross; Gary Xie; Myriam Bélanger; Dibyendu Kumar; Joan A Whitlock; Li Liu; William G Farmerie; Hajnalka E Daligault; Cliff S Han; Thomas S Brettin; Ann Progulske-Fox
Journal:  Genome Announc       Date:  2015-09-24

8.  CRISPR regulation of intraspecies diversification by limiting IS transposition and intercellular recombination.

Authors:  Takayasu Watanabe; Takashi Nozawa; Chihiro Aikawa; Atsuo Amano; Fumito Maruyama; Ichiro Nakagawa
Journal:  Genome Biol Evol       Date:  2013       Impact factor: 3.416

9.  The unique hmuY gene sequence as a specific marker of Porphyromonas gingivalis.

Authors:  Anna Gmiterek; Halina Wójtowicz; Paweł Mackiewicz; Małgorzata Radwan-Oczko; Małgorzata Kantorowicz; Maria Chomyszyn-Gajewska; Magdalena Frąszczak; Marcin Bielecki; Mariusz Olczak; Teresa Olczak
Journal:  PLoS One       Date:  2013-07-02       Impact factor: 3.240

10.  Identification and characterization of a minisatellite contained within a novel miniature inverted-repeat transposable element (MITE) of Porphyromonas gingivalis.

Authors:  Brian A Klein; Tsute Chen; Jodie C Scott; Andrea L Koenigsberg; Margaret J Duncan; Linden T Hu
Journal:  Mob DNA       Date:  2015-10-06
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