Literature DB >> 21705606

Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2.

Hyun Mi Jin1, Haeyoung Jeong, Eun-Joung Moon, Renukaradhya K Math, Kangseok Lee, Hae-Jin Kim, Che Ok Jeon, Tae Kwang Oh, Jihyun F Kim.   

Abstract

Alteromonas sp. strain SN2, able to metabolize polycyclic aromatic hydrocarbons, was isolated from a crude oil-contaminated sea-tidal flat. Here we report the complete 4.97-Mb genome sequence and annotation of strain SN2. These will advance the understanding of strain SN2's adaptation to the sea-tidal flat ecosystem and its pollutant metabolic versatility.

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Year:  2011        PMID： 21705606      PMCID： PMC3147666          DOI： 10.1128/JB.05252-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

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Authors:  William Hsiao; Ivan Wan; Steven J Jones; Fiona S L Brinkman
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Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-31       Impact factor: 11.205

4.  Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

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Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

5.  Base-calling of automated sequencer traces using phred. II. Error probabilities.

Authors:  B Ewing; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Consed: a graphical tool for sequence finishing.

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Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

7.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

8.  Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter.

Authors:  Elena Ivars-Martinez; Ana-Belen Martin-Cuadrado; Giuseppe D'Auria; Alex Mira; Steve Ferriera; Justin Johnson; Robert Friedman; Francisco Rodriguez-Valera
Journal:  ISME J       Date:  2008-07-31       Impact factor: 10.302

9.  Influence of soil components on the biodegradation of benzene, toluene, ethylbenzene, and o-, m-, and p-xylenes by the newly isolated bacterium Pseudoxanthomonas spadix BD-a59.

Authors:  Jeong Myeong Kim; Ngoc Thuan Le; Bok Sil Chung; Jin Ho Park; Jin-Woo Bae; Eugene L Madsen; Che Ok Jeon
Journal:  Appl Environ Microbiol       Date:  2008-10-03       Impact factor: 4.792

10.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971
  10 in total
  10 in total

1.  Heterologous expression of polycyclic aromatic hydrocarbon ring-hydroxylating dioxygenase genes from a novel pyrene-degrading betaproteobacterium.

Authors:  David R Singleton; Jing Hu; Michael D Aitken
Journal:  Appl Environ Microbiol       Date:  2012-03-16       Impact factor: 4.792

2.  Isolation and identification of a gene encoding 4-hydroxyphenylpyruvate dioxygenase from the red-brown pigment-producing bacterium Alteromonas stellipolaris LMG 21856.

Authors:  Sidong Zhu; Yanna Lu; Xu Xu; Jigang Chen; Jifang Yang; Xiangdong Ma
Journal:  Folia Microbiol (Praha)       Date:  2015-03-19       Impact factor: 2.099

3.  Genomes of surface isolates of Alteromonas macleodii: the life of a widespread marine opportunistic copiotroph.

Authors:  Mario López-Pérez; Aitor Gonzaga; Ana-Belen Martin-Cuadrado; Olga Onyshchenko; Akbar Ghavidel; Rohit Ghai; Francisco Rodriguez-Valera
Journal:  Sci Rep       Date:  2012-09-26       Impact factor: 4.379

4.  The phn Island: A New Genomic Island Encoding Catabolism of Polynuclear Aromatic Hydrocarbons.

Authors:  William J Hickey; Shicheng Chen; Jiangchao Zhao
Journal:  Front Microbiol       Date:  2012-04-04       Impact factor: 5.640

5.  Comparative genomics reveals adaptation by Alteromonas sp. SN2 to marine tidal-flat conditions: cold tolerance and aromatic hydrocarbon metabolism.

Authors:  Renukaradhya K Math; Hyun Mi Jin; Jeong Myeong Kim; Yoonsoo Hahn; Woojun Park; Eugene L Madsen; Che Ok Jeon
Journal:  PLoS One       Date:  2012-04-26       Impact factor: 3.240

6.  Evident bacterial community changes but only slight degradation when polluted with pyrene in a red soil.

Authors:  Gaidi Ren; Wenjie Ren; Ying Teng; Zhengao Li
Journal:  Front Microbiol       Date:  2015-01-30       Impact factor: 5.640

7.  Comparative Genomics and Metabolic Analysis Reveals Peculiar Characteristics of Rhodococcus opacus Strain M213 Particularly for Naphthalene Degradation.

Authors:  Ashish Pathak; Ashvini Chauhan; Jochen Blom; Karl J Indest; Carina M Jung; Paul Stothard; Gopal Bera; Stefan J Green; Andrew Ogram
Journal:  PLoS One       Date:  2016-08-17       Impact factor: 3.240

8.  Genome Sequence and Metabolic Analysis of a Fluoranthene-Degrading Strain Pseudomonas aeruginosa DN1.

Authors:  Chunqiu He; Yanpeng Li; Chao Huang; Fulin Chen; Yanling Ma
Journal:  Front Microbiol       Date:  2018-10-31       Impact factor: 5.640

9.  Genome-wide transcriptional responses of Alteromonas naphthalenivorans SN2 to contaminated seawater and marine tidal flat sediment.

Authors:  Hyun Mi Jin; Hye Im Jeong; Kyung Hyun Kim; Yoonsoo Hahn; Eugene L Madsen; Che Ok Jeon
Journal:  Sci Rep       Date:  2016-02-18       Impact factor: 4.379

10.  Genome analysis of deep sea piezotolerant Nesiotobacter exalbescens COD22 and toluene degradation studies under high pressure condition.

Authors:  A Ganesh Kumar; Noelin Chinnu Mathew; K Sujitha; R Kirubagaran; G Dharani
Journal:  Sci Rep       Date:  2019-12-10       Impact factor: 4.379
  10 in total

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