Literature DB >> 21705601

Complete genome sequence of the Crohn's disease-associated adherent-invasive Escherichia coli strain HM605.

David J Clarke1, Roy R Chaudhuri, Helen M Martin, Barry J Campbell, Jonathan M Rhodes, Chrystala Constantinidou, Mark J Pallen, Nicholas J Loman, Adam F Cunningham, Douglas F Browning, Ian R Henderson.   

Abstract

Adherent-invasive Escherichia coli strains are increasingly being associated with intestinal pathologies. Here we present the genome sequence of E. coli HM605, a strain isolated from colonic biopsy specimens of a patient with Crohn's disease.

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Year:  2011        PMID： 21705601      PMCID： PMC3165516          DOI： 10.1128/JB.05374-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Enhanced Escherichia coli adherence and invasion in Crohn's disease and colon cancer.

Authors:  Helen M Martin; Barry J Campbell; C Anthony Hart; Chiedzo Mpofu; Manu Nayar; Ravinder Singh; Hans Englyst; Helen F Williams; Jonathan M Rhodes
Journal:  Gastroenterology       Date:  2004-07       Impact factor: 22.682

2.  Sequence of pR3521, an IncB plasmid from Escherichia coli encoding ACC-4, SCO-1, and TEM-1 beta-lactamases.

Authors:  C C Papagiannitsis; L S Tzouvelekis; S D Kotsakis; E Tzelepi; V Miriagou
Journal:  Antimicrob Agents Chemother       Date:  2010-10-18       Impact factor: 5.191

3.  Invasive ability of an Escherichia coli strain isolated from the ileal mucosa of a patient with Crohn's disease.

Authors:  J Boudeau; A L Glasser; E Masseret; B Joly; A Darfeuille-Michaud
Journal:  Infect Immun       Date:  1999-09       Impact factor: 3.441

Review 4.  Adherent-invasive Escherichia coli and Crohn's disease.

Authors:  Nicolas Barnich; Arlette Darfeuille-Michaud
Journal:  Curr Opin Gastroenterol       Date:  2007-01       Impact factor: 3.287

5.  A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407.

Authors:  Lisa C Crossman; Roy R Chaudhuri; Scott A Beatson; Timothy J Wells; Mickael Desvaux; Adam F Cunningham; Nicola K Petty; Vivienne Mahon; Carl Brinkley; Jon L Hobman; Stephen J Savarino; Susan M Turner; Mark J Pallen; Charles W Penn; Julian Parkhill; A Keith Turner; Timothy J Johnson; Nicholas R Thomson; Stephen G J Smith; Ian R Henderson
Journal:  J Bacteriol       Date:  2010-08-27       Impact factor: 3.490

6.  The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates.

Authors:  David A Rasko; M J Rosovitz; Garry S A Myers; Emmanuel F Mongodin; W Florian Fricke; Pawel Gajer; Jonathan Crabtree; Mohammed Sebaihia; Nicholas R Thomson; Roy Chaudhuri; Ian R Henderson; Vanessa Sperandio; Jacques Ravel
Journal:  J Bacteriol       Date:  2008-08-01       Impact factor: 3.490

7.  Complete genome sequence of Crohn's disease-associated adherent-invasive E. coli strain LF82.

Authors:  Sylvie Miquel; Eric Peyretaillade; Laurent Claret; Amélie de Vallée; Carole Dossat; Benoit Vacherie; El Hajji Zineb; Beatrice Segurens; Valerie Barbe; Pierre Sauvanet; Christel Neut; Jean-Frédéric Colombel; Claudine Medigue; Francisco J M Mojica; Pierre Peyret; Richard Bonnet; Arlette Darfeuille-Michaud
Journal:  PLoS One       Date:  2010-09-17       Impact factor: 3.240

8.  Genome sequence of adherent-invasive Escherichia coli and comparative genomic analysis with other E. coli pathotypes.

Authors:  John He Nash; Andre Villegas; Andrew M Kropinski; Renan Aguilar-Valenzuela; Paulina Konczy; Mariola Mascarenhas; Kim Ziebell; Alfredo G Torres; Mohamed A Karmali; Brian K Coombes
Journal:  BMC Genomics       Date:  2010-11-25       Impact factor: 3.969

9.  Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042.

Authors:  Roy R Chaudhuri; Mohammed Sebaihia; Jon L Hobman; Mark A Webber; Denisse L Leyton; Martin D Goldberg; Adam F Cunningham; Anthony Scott-Tucker; Paul R Ferguson; Christopher M Thomas; Gad Frankel; Christoph M Tang; Edward G Dudley; Ian S Roberts; David A Rasko; Mark J Pallen; Julian Parkhill; James P Nataro; Nicholas R Thomson; Ian R Henderson
Journal:  PLoS One       Date:  2010-01-20       Impact factor: 3.240

10.  Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69.

Authors:  Atsushi Iguchi; Nicholas R Thomson; Yoshitoshi Ogura; David Saunders; Tadasuke Ooka; Ian R Henderson; David Harris; M Asadulghani; Ken Kurokawa; Paul Dean; Brendan Kenny; Michael A Quail; Scott Thurston; Gordon Dougan; Tetsuya Hayashi; Julian Parkhill; Gad Frankel
Journal:  J Bacteriol       Date:  2008-10-24       Impact factor: 3.490
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  19 in total

1.  Host defense peptide resistance contributes to colonization and maximal intestinal pathology by Crohn's disease-associated adherent-invasive Escherichia coli.

Authors:  Joseph B McPhee; Cherrie L Small; Sarah A Reid-Yu; John R Brannon; Hervé Le Moual; Brian K Coombes
Journal:  Infect Immun       Date:  2014-05-27       Impact factor: 3.441

Review 2.  Pathogenesis of human enterovirulent bacteria: lessons from cultured, fully differentiated human colon cancer cell lines.

Authors:  Vanessa Liévin-Le Moal; Alain L Servin
Journal:  Microbiol Mol Biol Rev       Date:  2013-09       Impact factor: 11.056

Review 3.  Mycobiota in gastrointestinal diseases.

Authors:  Pranab K Mukherjee; Boualem Sendid; Gautier Hoarau; Jean-Frédéric Colombel; Daniel Poulain; Mahmoud A Ghannoum
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2014-11-11       Impact factor: 46.802

Review 4.  Escherichia coli in chronic inflammatory bowel diseases: An update on adherent invasive Escherichia coli pathogenicity.

Authors:  Margarita Martinez-Medina; Librado Jesus Garcia-Gil
Journal:  World J Gastrointest Pathophysiol       Date:  2014-08-15

5.  Escherichia coli isolates from inflammatory bowel diseases patients survive in macrophages and activate NLRP3 inflammasome.

Authors:  Marjorie De la Fuente; Luigi Franchi; Daniela Araya; David Díaz-Jiménez; Mauricio Olivares; Manuel Álvarez-Lobos; Douglas Golenbock; María-Julieta González; Francisco López-Kostner; Rodrigo Quera; Gabriel Núñez; Roberto Vidal; Marcela A Hermoso
Journal:  Int J Med Microbiol       Date:  2014-02-06       Impact factor: 3.473

Review 6.  Bacterial serine proteases secreted by the autotransporter pathway: classification, specificity, and role in virulence.

Authors:  Fernando Ruiz-Perez; James P Nataro
Journal:  Cell Mol Life Sci       Date:  2013-05-21       Impact factor: 9.261

7.  Escherichia coli from Crohn's disease patient displays virulence features of enteroinvasive (EIEC), enterohemorragic (EHEC), and enteroaggregative (EAEC) pathotypes.

Authors:  Ana Carolina da Silva Santos; Fernando Gomes Romeiro; Ligia Yukie Sassaki; Josias Rodrigues
Journal:  Gut Pathog       Date:  2015-01-29       Impact factor: 4.181

8.  Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis.

Authors:  Yuanhao Zhang; Leahana Rowehl; Julia M Krumsiek; Erika P Orner; Nurmohammad Shaikh; Phillip I Tarr; Erica Sodergren; George M Weinstock; Edgar C Boedeker; Xuejian Xiong; John Parkinson; Daniel N Frank; Ellen Li; Grace Gathungu
Journal:  PLoS One       Date:  2015-06-30       Impact factor: 3.240

9.  Genetic Diversity and Virulence Determinants of Escherichia coli Strains Isolated from Patients with Crohn's Disease in Spain and Chile.

Authors:  Sandra Céspedes; Waleska Saitz; Felipe Del Canto; Marjorie De la Fuente; Rodrigo Quera; Marcela Hermoso; Rául Muñoz; Daniel Ginard; Sam Khorrami; Jorge Girón; Rodrigo Assar; Ramón Rosselló-Mora; Roberto M Vidal
Journal:  Front Microbiol       Date:  2017-05-24       Impact factor: 5.640

10.  Genome analysis of E. coli isolated from Crohn's disease patients.

Authors:  Daria V Rakitina; Alexander I Manolov; Alexandra V Kanygina; Sofya K Garushyants; Julia P Baikova; Dmitry G Alexeev; Valentina G Ladygina; Elena S Kostryukova; Andrei K Larin; Tatiana A Semashko; Irina Y Karpova; Vladislav V Babenko; Ruzilya K Ismagilova; Sergei Y Malanin; Mikhail S Gelfand; Elena N Ilina; Roman B Gorodnichev; Eugenia S Lisitsyna; Gennady I Aleshkin; Petr L Scherbakov; Igor L Khalif; Marina V Shapina; Igor V Maev; Dmitry N Andreev; Vadim M Govorun
Journal:  BMC Genomics       Date:  2017-07-19       Impact factor: 3.969
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