Literature DB >> 21705593

Genome sequence of Halorhabdus tiamatea, the first archaeon isolated from a deep-sea anoxic brine lake.

André Antunes1, Intikhab Alam, Vladimir B Bajic, Ulrich Stingl.   

Abstract

We present the draft genome of Halorhabdus tiamatea, the first member of the Archaea ever isolated from a deep-sea anoxic brine. Genome comparison with Halorhabdus utahensis revealed some striking differences, including a marked increase in genes associated with transmembrane transport and putative genes for a trehalose synthase and a lactate dehydrogenase.

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Year:  2011        PMID： 21705593      PMCID： PMC3165509          DOI： 10.1128/JB.05462-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  11 in total

1.  Halorhabdus utahensis gen. nov., sp. nov., an aerobic, extremely halophilic member of the Archaea from Great Salt Lake, Utah.

Authors:  M Wainø; B J Tindall; K Ingvorsen
Journal:  Int J Syst Evol Microbiol       Date:  2000-01       Impact factor: 2.747

2.  The evolution of microbial phosphonate degradative pathways.

Authors:  Jinling Huang; Zhengchang Su; Ying Xu
Journal:  J Mol Evol       Date:  2005-10-20       Impact factor: 2.395

3.  2-Sulfotrehalose, a novel osmolyte in haloalkaliphilic archaea.

Authors:  D Desmarais; P E Jablonski; N S Fedarko; M F Roberts
Journal:  J Bacteriol       Date:  1997-05       Impact factor: 3.490

4.  Pyruvate metabolism in Halobacterium salinarium studied by intracellular 13C nuclear magnetic resonance spectroscopy.

Authors:  S R Bhaumik; H M Sonawat
Journal:  J Bacteriol       Date:  1994-04       Impact factor: 3.490

5.  Halorhabdus tiamatea sp. nov., a non-pigmented, extremely halophilic archaeon from a deep-sea, hypersaline anoxic basin of the Red Sea, and emended description of the genus Halorhabdus.

Authors:  André Antunes; Marco Taborda; Robert Huber; Christine Moissl; M Fernanda Nobre; Milton S da Costa
Journal:  Int J Syst Evol Microbiol       Date:  2008-01       Impact factor: 2.747

6.  Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes.

Authors:  André Antunes; David Kamanda Ngugi; Ulrich Stingl
Journal:  Environ Microbiol Rep       Date:  2011-05-30       Impact factor: 3.541

7.  Complete genome sequence of Halorhabdus utahensis type strain (AX-2).

Authors:  Iain Anderson; Brian J Tindall; Helga Pomrenke; Markus Göker; Alla Lapidus; Matt Nolan; Alex Copeland; Tijana Glavina Del Rio; Feng Chen; Hope Tice; Jan-Fang Cheng; Susan Lucas; Olga Chertkov; David Bruce; Thomas Brettin; John C Detter; Cliff Han; Lynne Goodwin; Miriam Land; Loren Hauser; Yun-Juan Chang; Cynthia D Jeffries; Sam Pitluck; Amrita Pati; Konstantinos Mavromatis; Natalia Ivanova; Galina Ovchinnikova; Amy Chen; Krishna Palaniappan; Patrick Chain; Manfred Rohde; Jim Bristow; Jonathan A Eisen; Victor Markowitz; Philip Hugenholtz; Nikos C Kyrpides; Hans-Peter Klenk
Journal:  Stand Genomic Sci       Date:  2009-11-22

8.  The OtsAB pathway is essential for trehalose biosynthesis in Mycobacterium tuberculosis.

Authors:  Helen N Murphy; Graham R Stewart; Vladimir V Mischenko; Alexander S Apt; Richard Harris; Mark S B McAlister; Paul C Driscoll; Douglas B Young; Brian D Robertson
Journal:  J Biol Chem       Date:  2005-02-09       Impact factor: 5.157

9.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

Review 10.  Metabolism of halophilic archaea.

Authors:  Michaela Falb; Kerstin Müller; Lisa Königsmaier; Tanja Oberwinkler; Patrick Horn; Susanne von Gronau; Orland Gonzalez; Friedhelm Pfeiffer; Erich Bornberg-Bauer; Dieter Oesterhelt
Journal:  Extremophiles       Date:  2008-02-16       Impact factor: 2.395
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  6 in total

Review 1.  Utilization of glyphosate as phosphate source: biochemistry and genetics of bacterial carbon-phosphorus lyase.

Authors:  Bjarne Hove-Jensen; David L Zechel; Bjarne Jochimsen
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

Review 2.  Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity.

Authors:  Jens Nielsen; John Archer; Magbubah Essack; Vladimir B Bajic; Takashi Gojobori; Ivan Mijakovic
Journal:  Appl Microbiol Biotechnol       Date:  2017-05-20       Impact factor: 4.813

3.  Dynamic structure mediates halophilic adaptation of a DNA polymerase from the deep-sea brines of the Red Sea.

Authors:  Masateru Takahashi; Etsuko Takahashi; Luay I Joudeh; Monica Marini; Gobind Das; Mohamed M Elshenawy; Anastassja Akal; Kosuke Sakashita; Intikhab Alam; Muhammad Tehseen; Mohamed A Sobhy; Ulrich Stingl; Jasmeen S Merzaban; Enzo Di Fabrizio; Samir M Hamdan
Journal:  FASEB J       Date:  2018-01-24       Impact factor: 5.191

4.  INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.

Authors:  Intikhab Alam; André Antunes; Allan Anthony Kamau; Wail Ba Alawi; Manal Kalkatawi; Ulrich Stingl; Vladimir B Bajic
Journal:  PLoS One       Date:  2013-12-06       Impact factor: 3.240

5.  Halorhabdus tiamatea: proteogenomics and glycosidase activity measurements identify the first cultivated euryarchaeon from a deep-sea anoxic brine lake as potential polysaccharide degrader.

Authors:  Johannes Werner; Manuel Ferrer; Gurvan Michel; Alexander J Mann; Sixing Huang; Silvia Juarez; Sergio Ciordia; Juan P Albar; María Alcaide; Violetta La Cono; Michail M Yakimov; André Antunes; Marco Taborda; Milton S da Costa; Tran Hai; Frank Oliver Glöckner; Olga V Golyshina; Peter N Golyshin; Hanno Teeling
Journal:  Environ Microbiol       Date:  2014-02-27       Impact factor: 5.491

6.  First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea.

Authors:  André Antunes; Intikhab Alam; Marta Filipa Simões; Camille Daniels; Ari J S Ferreira; Rania Siam; Hamza El-Dorry; Vladimir B Bajic
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-10-31       Impact factor: 7.691
  6 in total

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