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Literature DB >> 21705588

Genome sequence of Salinisphaera shabanensis, a gammaproteobacterium from the harsh, variable environment of the brine-seawater interface of the Shaban Deep in the Red Sea.

André Antunes¹, Intikhab Alam, Vladimir B Bajic, Ulrich Stingl.

Abstract

We present the genome of Salinisphaera shabanensis, isolated from a brine-seawater interface and representing a new order within the Gammaproteobacteria. Its adaptations to physicochemical and nutrient availability fluctuations include six genes encoding heavy metal-translocating P-type ATPases and multiple genes involved in iron uptake, siderophore production, and poly-β-hydroxybutyrate synthesis.

Entities: Chemical Species

Mesh：

Substances：

Year: 2011 PMID： 21705588 PMCID： PMC3165523 DOI： 10.1128/JB.05459-11

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

5 in total

1. Salinisphaera shabanensis gen. nov., sp. nov., a novel, moderately halophilic bacterium from the brine-seawater interface of the Shaban Deep, Red Sea.

Authors: André Antunes; Wolfgang Eder; Paula Fareleira; Helena Santos; Robert Huber
Journal: Extremophiles Date: 2002-09-28 Impact factor: 2.395

2. Prodigal: prokaryotic gene recognition and translation initiation site identification.

Authors: Doug Hyatt; Gwo-Liang Chen; Philip F Locascio; Miriam L Land; Frank W Larimer; Loren J Hauser
Journal: BMC Bioinformatics Date: 2010-03-08 Impact factor: 3.169

3. Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes.

Authors: André Antunes; David Kamanda Ngugi; Ulrich Stingl
Journal: Environ Microbiol Rep Date: 2011-05-30 Impact factor: 3.541

Review 4. Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: towards a catalogue of metal-responsive genes.

Authors: Max Mergeay; Sébastien Monchy; Tatiana Vallaeys; Vanessa Auquier; Abderrafi Benotmane; Philippe Bertin; Safiyh Taghavi; John Dunn; Daniel van der Lelie; Ruddy Wattiez
Journal: FEMS Microbiol Rev Date: 2003-06 Impact factor: 16.408

5. The RAST Server: rapid annotations using subsystems technology.

Authors: Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal: BMC Genomics Date: 2008-02-08 Impact factor: 3.969

5 in total

Genome sequence of Salinisphaera shabanensis, a gammaproteobacterium from the harsh, variable environment of the brine-seawater interface of the Shaban Deep in the Red Sea.

1. Salinisphaera shabanensis gen. nov., sp. nov., a novel, moderately halophilic bacterium from the brine-seawater interface of the Shaban Deep, Red Sea.

2. Prodigal: prokaryotic gene recognition and translation initiation site identification.

3. Microbiology of the Red Sea (and other) deep-sea anoxic brine lakes.

Review 4. Ralstonia metallidurans, a bacterium specifically adapted to toxic metals: towards a catalogue of metal-responsive genes.

5. The RAST Server: rapid annotations using subsystems technology.

1. Microbial communities and their predicted metabolic functions in a desiccating acid salt lake.

2. Diuron tolerance and potential degradation by pelagic microbiomes in the Great Barrier Reef lagoon.

Review 3. Building a bio-based industry in the Middle East through harnessing the potential of the Red Sea biodiversity.

4. INDIGO - INtegrated data warehouse of microbial genomes with examples from the red sea extremophiles.

5. First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea.