Literature DB >> 21705584

Genome sequence of the thermophilic strain Bacillus coagulans 2-6, an efficient producer of high-optical-purity L-lactic acid.

Fei Su1, Bo Yu, Jibin Sun, Hong-Yu Ou, Bo Zhao, Limin Wang, Jiayang Qin, Hongzhi Tang, Fei Tao, Michael Jarek, Maren Scharfe, Cuiqing Ma, Yanhe Ma, Ping Xu.   

Abstract

Bacillus coagulans 2-6 is an efficient producer of lactic acid. The genome of B. coagulans 2-6 has the smallest genome among the members of the genus Bacillus known to date. The frameshift mutation at the start of the d-lactate dehydrogenase sequence might be responsible for the production of high-optical-purity l-lactic acid.

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Year:  2011        PMID: 21705584      PMCID: PMC3165500          DOI: 10.1128/JB.05378-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  13 in total

1.  Basic local alignment search tool.

Authors:  S F Altschul; W Gish; W Miller; E W Myers; D J Lipman
Journal:  J Mol Biol       Date:  1990-10-05       Impact factor: 5.469

2.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

3.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

4.  Computation with the KEGG pathway database.

Authors:  H Ogata; S Goto; W Fujibuchi; M Kanehisa
Journal:  Biosystems       Date:  1998 Jun-Jul       Impact factor: 1.973

5.  Consed: a graphical tool for sequence finishing.

Authors:  D Gordon; C Abajian; P Green
Journal:  Genome Res       Date:  1998-03       Impact factor: 9.043

6.  Isolation and characterization of acid-tolerant, thermophilic bacteria for effective fermentation of biomass-derived sugars to lactic acid.

Authors:  Milind A Patel; Mark S Ou; Roberta Harbrucker; Henry C Aldrich; Marian L Buszko; Lonnie O Ingram; K T Shanmugam
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

7.  Coagulin, a bacteriocin-like inhibitory substance produced by Bacillus coagulans I4.

Authors:  B Hyronimus; C Le Marrec; M C Urdaci
Journal:  J Appl Microbiol       Date:  1998-07       Impact factor: 3.772

8.  Fermentation of sugar cane bagasse hemicellulose hydrolysate to L(+)-lactic acid by a thermotolerant acidophilic Bacillus sp.

Authors:  Milind Patel; Mark Ou; L O Ingram; K T Shanmugam
Journal:  Biotechnol Lett       Date:  2004-06       Impact factor: 2.461

9.  De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.

Authors:  David Hernandez; Patrice François; Laurent Farinelli; Magne Osterås; Jacques Schrenzel
Journal:  Genome Res       Date:  2008-03-10       Impact factor: 9.043

10.  NCBI Reference Sequences: current status, policy and new initiatives.

Authors:  Kim D Pruitt; Tatiana Tatusova; William Klimke; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2008-10-16       Impact factor: 16.971

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  12 in total

1.  Elucidating the Role and Regulation of a Lactate Permease as Lactate Transporter in Bacillus coagulans DSM1.

Authors:  Yu Wang; Caili Zhang; Guoxia Liu; Jiansong Ju; Bo Yu; Limin Wang
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

2.  Unique Features of Tandem Repeats in Bacteria.

Authors:  Juan A Subirana; Xavier Messeguer
Journal:  J Bacteriol       Date:  2020-10-08       Impact factor: 3.490

3.  Major Role of NAD-Dependent Lactate Dehydrogenases in the Production of l-Lactic Acid with High Optical Purity by the Thermophile Bacillus coagulans.

Authors:  Limin Wang; Yumeng Cai; Lingfeng Zhu; Honglian Guo; Bo Yu
Journal:  Appl Environ Microbiol       Date:  2014-09-12       Impact factor: 4.792

4.  Escherichia coli transcription termination factor NusA: heat-induced oligomerization and chaperone activity.

Authors:  Kun Li; Tianyi Jiang; Bo Yu; Limin Wang; Chao Gao; Cuiqing Ma; Ping Xu; Yanhe Ma
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

5.  Complete Genome Sequence of a thermotolerant sporogenic lactic acid bacterium, Bacillus coagulans strain 36D1.

Authors:  Mun Su Rhee; Brélan E Moritz; Gary Xie; T Glavina Del Rio; E Dalin; H Tice; D Bruce; L Goodwin; O Chertkov; T Brettin; C Han; C Detter; S Pitluck; Miriam L Land; Milind Patel; Mark Ou; Roberta Harbrucker; Lonnie O Ingram; K T Shanmugam
Journal:  Stand Genomic Sci       Date:  2011-12-22

6.  Genome Sequence of Bacillus coagulans P38, an Efficient Polymer-Grade l-Lactate Producer from Cellulosic Substrates.

Authors:  Lili Peng; Lifu Song; Lifan Sun; Yumeng Cai; Limin Wang; Bo Yu
Journal:  Genome Announc       Date:  2015-05-21

7.  Comparative transcriptome analysis reveals different molecular mechanisms of Bacillus coagulans 2-6 response to sodium lactate and calcium lactate during lactic acid production.

Authors:  Jiayang Qin; Xiuwen Wang; Landong Wang; Beibei Zhu; Xiaohua Zhang; Qingshou Yao; Ping Xu
Journal:  PLoS One       Date:  2015-04-15       Impact factor: 3.240

8.  Genome Sequences of Two Morphologically Distinct and Thermophilic Bacillus coagulans Strains, H-1 and XZL9.

Authors:  Ke Xu; Fei Su; Fei Tao; Chao Li; Jun Ni; Ping Xu
Journal:  Genome Announc       Date:  2013-05-16

9.  Functional analysis of the ComK protein of Bacillus coagulans.

Authors:  Ákos T Kovács; Tom H Eckhardt; Mariska van Hartskamp; Richard van Kranenburg; Oscar P Kuipers
Journal:  PLoS One       Date:  2013-01-03       Impact factor: 3.240

10.  Genomic analysis of thermophilic Bacillus coagulans strains: efficient producers for platform bio-chemicals.

Authors:  Fei Su; Ping Xu
Journal:  Sci Rep       Date:  2014-01-29       Impact factor: 4.379

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