| Literature DB >> 21701577 |
Sonsoles Morcillo1, Gracia María Martín-Núñez, Gemma Rojo-Martínez, María Cruz Almaraz, Eva García-Escobar, María Luisa Mansego, Griselda de Marco, Felipe J Chaves, Federico Soriguer.
Abstract
BACKGROUND: The elongase of long chain fatty acids family 6 (ELOVL6) is an enzyme that specifically catalyzes the elongation of saturated and monounsaturated fatty acids with 12, 14 and 16 carbons. ELOVL6 is expressed in lipogenic tissues and it is regulated by sterol regulatory element binding protein 1 (SREBP-1).Entities:
Mesh:
Substances:
Year: 2011 PMID: 21701577 PMCID: PMC3118791 DOI: 10.1371/journal.pone.0021198
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Characteristics of ELOVL6 SNPs studied.
| Name | Consequence | Sequence | HGVS Names | MAF |
| rs3813825 | 3PRIME_UTR,DOWNSTREAM | CTTCCTCCTG[T/A]TTGACACTTT | NT_016354.18:g.35515815T>A | 0.205 |
| rs17041272 | 3PRIME_UTR,DOWNSTREAM | GGTTAGAAAC[G/C]GAAGTGAGCA | NT_016354.18:g.35518228C>G | 0.058 |
| rs4141123 | INTRONIC | AGTTAATTCT[A/G]TAAAATGAAA | NM_024090.1:c.374–747G>A | 0.397 |
| rs9997926 | INTRONIC |
| NT_016354.19:g.35524800C>T | 0.103 |
| rs6824447 | UPSTREAM | ATAATAAGGA[A/G]CCCTGCTTTT | NT_016354.18:g.35668859G>A | 0.476 |
*MAF: minor allele frequency.
General characteristics of the study population*.
| Baseline study(n = 824) | Follow-up study(n = 824) | |
| Age (years) | 40.6±13.4 | 46.7±13.9 |
| Sex (male/female) (%) | 36.4/63.6 | 36.4/63.6 |
| BMI(weight/height2)(Kg/m2) | 27.6±5.0 | 28.7±5.2 |
| Baseline glucose (mg/dl) | 96.3±23.4 | 96.2±23.0 |
| Baseline insulin (µU/ml) | 10.4±7.7 | 9.0±7.5 |
| Triglycerides (mg/dl) | 107.2±76.1 | 99.5±67 |
| Total cholesterol (mg/dl) | 199.1±43.2 | 202.7±39.7 |
| HOMA IR | 2.7±2.4 | 2.5±2.4 |
| HOMA_75 (%) | 37.1 | 39.9 |
| Obesity (%) | 29.3 | 36.3 |
| Intake of olive oil (%) | 75.2% | ------ |
*Persons who completed both the baseline and follow-up studies.
HOMA75: persons who had HOMA IR above the 75th percentile.
Data are means ± SD or proportions (%).
Obesity: BMI ≥30 kg/m2.
Glucose levels, insulin levels and HOMA75 in baseline and follow up study according to SNP distribution.
| Baseline study | Follow-up study | Incidence of HOMA75 | |||||
| Insu_120 | Gluc_120 | HOM75% (%) | Insu_120 | Gluc 120 | HOM75% (%) | (%) | |
| Rs3813825 | |||||||
| TT | 50±46 | 118±32 | 33.7 | 43±41 | 118±38 | 38.5 | 28.3 |
| AT | 47±40 | 116±32 | 36.9 | 38±31 | 114±32 | 39.6 | 24.4 |
| AA | 77±53 | 132±45 | 60.0 | 57±80 | 139±63 | 53.1 | 33.3 |
| Rs17041272 | |||||||
| CC | 51±46 | 118±33 | 36.0 | 42±41 | 117±37 | 39.0 | 25.9 |
| CG | 50±34 | 120±33 | 34.9 | 45±38 | 123±44 | 47.1 | 38.9 |
| GG | 53±31 | 116±56 | 60.0 | 41±21 | 109±17 | 40.0 | |
| Rs4141123 | |||||||
| AA | 56±41 | 122±38 | 38.9 | 48±55 | 119±42 | 41.5 | 26.3 |
| AG | 52±45 | 117±31 | 38.7 | 40±37 | 118±39 | 39.3 | 25.6 |
| GG | 48±45 | 118±33 | 31.1 | 42±37 | 117±34 | 40.1 | 30.2 |
| Rs9997926 | |||||||
| CC | 50±45 | 118±33 | 35.6 | 43±40 | 119±38 | 42.1 | 29.8 |
| CT | 52±47 | 117±33 | 34.0 | 38±34 | 117±40 | 29.9 | 17.9 |
| TT | 66±30 | 130±21 | 60.0 | 89±103 | 122±32 | 40.0 | |
| Rs6824447 | |||||||
| AA | 52±45 | 119±34 | 40.7 | 42±34 | 119±35 | 44.9 | 32.8 |
| AG | 50±42 | 118±32 | 32.4 | 41±41 | 118±38 | 36.9 | 24.9 |
| GG | 52±50 | 118±34 | 36.4 | 45±47 | 118±40 | 40.4 | 25.5 |
‡Persons who had HOMA IR below the 75th percentile and without type 2 diabetes at the baseline study and who had HOMA IR above the 75th percentile six years later.
Insu_120 = insulin at 120 min after an oral glucose load; Gluc_120 = glucose at 120 min after an oral glucose load.
*P<0.05. Chi_square test.
Values with different letters are significantly different (P<0.05). ANOVA test.
Insulin (µU/ml), glucose (mg/dl).
Risk of having high values of HOMA_IR (above the 75th percentile) at the follow-up study according to ELOVL6 SNPs.
| Model 1 | Model 2 | |||||||
| OR | P cod | P dom | P additive | OR | P cod | P dom | P additive | |
| Rs3813825 | ||||||||
| TT | 1.0 | NS | NS | NS | 1.0 | NS | 0.06 | 0.04 |
| AT | 1.1(0.8–1.5) | 1.4 (0.8–2.3) | ||||||
| AA | 2.3 (098–5.5) | 2.3 (0.6–8.5) | ||||||
| Rs17041272 | ||||||||
| CC | 1.0 | NS | NS | NS | 1.0 | 0.02 | 0.007 | 0.01 |
| CG/GG | 1.3 (0.8–2.2) | 2.6 (1.2–5.4) | ||||||
| Rs4141123 | ||||||||
| AA | 1.0 | NS | NS | NS | 1.0 | NS | NS | NS |
| AG | 1.04 (0.7–1.4) | 1.5 (0.9–2.5) | ||||||
| GG | 1.1 (0.7–1.8) | 1.6 (0.8–3.1) | ||||||
| Rs9997926 | ||||||||
| CC | 1.0 | 0.03 | 0.01 | 0.01 | 1.0 | NS | NS | NS |
| CT | 0.5 (0.3–0.8) | 0.5 (0.2–1.1) | ||||||
| TT | 0.4 (0.1–1.7) | 0.3 (0.04–2.4) | ||||||
| Rs6824447 | ||||||||
| AA | 1.0 | 0.05 | 0.03 | NS | 1.0 | 0.01 | 0.008 | 0.006 |
| AG | 0.6 (0.4–0.9) | 0.5(0.3–0.9) | ||||||
| GG | 0.8 (0.5–1.3) | 0.4 (0.2–0.8) | ||||||
Logistic regression model.
*Adjusted for age, sex and presence of obesity.
†Adjusted for age, sex, presence of obesity and intake of oil (olive vs sunflower).
P cod: P value for codominant model.
P dom: P value for dominant model.
The codominant model compared the heterozygotes and the homozygotes for the least frequent allele to the homozygotes for the most frequent allele. The dominant model compared a combination of the heterozygous and homozygous genotypes for the least frequent allele to the most frequent homozygous genotypes. The log-additive model is equivalent to calculating the odds ratio for the risk allele.
Figure 1HOMA_IR values by rs6824447 genotypes and intake of oil (olive vs sunflower).
Means were adjusted for age, sex and obesity. The P value shown was obtained for the interaction between rs6824447 and intake of oil in a multivariate ANOVA model.
Incidence of HOMA75 after six years in those persons who had HOMA_IR values below the 75th percentile at the baseline study.
| Model 1 | Model 2 | |||||
| OR (95% CI) | P dom | P additive | OR(95% CI) | P dom | P additive | |
| Rs3813825 | ||||||
| TT | 1.0 | NS | NS | 1.0 | NS | NS |
| AT+AA | 0.8 (0.5–1.5) | 1.2 (0.6–2.3) | ||||
| Rs17041272 | ||||||
| CC | 1.0 | 0.07 | 0.08 | 1.0 | 0.005 | 0.008 |
| CG+GG | 1.8 (0.9–3.3) | 3.6 (1.2–7.2) | ||||
| Rs4141123 | ||||||
| GG | 1.0 | NS | NS | 1.0 | NS | NS |
| AG+AA | 0.9 (0.5–1.6) | 0.9 (0.5–1.8) | ||||
| Rs9997926 | ||||||
| CC | 1.0 | 0.04 | 0.02 | 1.0 | 0.01 | 0.008 |
| CT+TT | 0.5 (0.3–1.0) | 0.3 (0.08–0.8) | ||||
| Rs6824447 | ||||||
| AA | 1.0 | NS | NS | 1.0 | 0.04 | 0.01 |
| AG+GG | 0.7 (0.4–1.3) | 0.4 (0.2–0.9) | ||||
Logistic regression model.
*Adjusted for age, sex and presence of obesity.
Adjusted for age, sex, presence of obesity and intake of oil (olive vs sunflower).
P dom: P value for dominant model.
The dominant model compared a combination of the heterozygous and homozygous genotypes for the least frequent allele to the most frequent homozygous genotypes. The log-additive model is equivalent to calculating the odds ratio for the risk allele.
Haplotypes estimated in the ELOVL6 gene and observed frequencies in the Pizarra study.
| rs17041272 (C/G) | rs6824447 (A/G) | rs9997926 (C/T) | Frequency | |
| Haplotype 1 | C | A | C | 0.459 |
| Haplotype 2 | C | A | T | 0.037 |
| Haplotype 3 | C | G | C | 0.380 |
| Haplotype 4 | C | G | T | 0.065 |
| Haplotype 5 | G | A | C | 0.027 |
| Haplotype 6 | G | A | T | 0 |
| Haplotype 7 | G | G | C | 0.03 |
| Haplotype 8 | G | G | T | 0 |
Association analysis between haplotypes and HOMA_IR.
| rs9997926 | rs6824447 | rs17041272 | Freq. | OR (95% CI) | P value | |
|
| ||||||
| Haplo Base | C | A | C | 0.458 | 1.00 (Reference haplotype) | |
| Hap I | C | G | C | 0.379 | 0.91(0.73–1.2) | NS |
| Hap II | T | G | C | 0.065 | 0.54(0.32–0.86) | 0.01 |
| Hap rare | * | * | * | 0.096 | 0.95(0.66–1.37) | NS |
|
| ||||||
| Haplo Base | C | A | C | 0.468 | 1.00(Reference haplotype) | |
| Hap I | C | G | C | 0.381 | 0.69(0.47–0.99) | 0.04 |
| Hap II | T | G | C | 0.053 | 0.42(0.17–1.02) | 0.05 |
| Hap rare | * | * | * | 0.097 | 1.5(0.84–2.67) | 0.17 |
| Sunflower vs olive il | 2.26(1.34–3.81) | 0.002 | ||||
| Age | 1.05(1.03–1.07) | <0.001 | ||||
| Sex | 0.87(0.54–1.41) | 0.58 |
Logistic regression model. Dependent variable: HOMA_ IR above or below the 75th percentile of the distribution of HOMA IR in the persons with OGTT-N (0 = HOMA IR ≤75th percentile; 1 = HOMA IR>75th percentile).
Model adjusted for age, sex and oil intake.