Literature DB >> 21700676

ODORactor: a web server for deciphering olfactory coding.

Xinyi Liu1, Xubo Su, Fei Wang, Zhimin Huang, Qi Wang, Zhen Li, Ruina Zhang, Lifang Wu, Yi Pan, Yingyi Chen, Hanyi Zhuang, Guoqiang Chen, Ting Shi, Jian Zhang.   

Abstract

SUMMARY: ODORactor is an open access web server aimed at providing a platform for identifying odorant receptors (ORs) for small molecules and for browsing existing OR-ligand pairs. It enables the prediction of ORs from the molecular structures of arbitrary chemicals by integrating two individual functionalities: odorant verification and OR recognition. The prediction of the ORs for several odorants was experimentally validated in the study. In addition, ODORactor features a comprehensive repertoire of olfactory information that has been manually curated from literature. Therefore, ODORactor may provide an effective way to decipher olfactory coding and could be a useful server tool for both basic olfaction research in academia and for odorant discovery in industry. AVAILABILITY: Freely available at http://mdl.shsmu.edu.cn/ODORactor CONTACT: jian.zhang@sjtu.edu.cn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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Year:  2011        PMID: 21700676     DOI: 10.1093/bioinformatics/btr385

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  12 in total

1.  Building the Chordata Olfactory Receptor Database using more than 400,000 receptors annotated by Genome2OR.

Authors:  Wei Han; Yiran Wu; Liting Zeng; Suwen Zhao
Journal:  Sci China Life Sci       Date:  2022-06-10       Impact factor: 6.038

2.  Insights into the molecular triggers of parosmia based on gas chromatography olfactometry.

Authors:  Jane K Parker; Christine E Kelly; Simon B Gane
Journal:  Commun Med (Lond)       Date:  2022-05-24

3.  A 3D transcriptomics atlas of the mouse nose sheds light on the anatomical logic of smell.

Authors:  Mayra L Ruiz Tejada Segura; Eman Abou Moussa; Elisa Garabello; Thiago S Nakahara; Melanie Makhlouf; Lisa S Mathew; Li Wang; Filippo Valle; Susie S Y Huang; Joel D Mainland; Michele Caselle; Matteo Osella; Stephan Lorenz; Johannes Reisert; Darren W Logan; Bettina Malnic; Antonio Scialdone; Luis R Saraiva
Journal:  Cell Rep       Date:  2022-03-22       Impact factor: 9.423

4.  A transcriptomic atlas of mammalian olfactory mucosae reveals an evolutionary influence on food odor detection in humans.

Authors:  Luis R Saraiva; Fernando Riveros-McKay; Massimo Mezzavilla; Eman H Abou-Moussa; Charles J Arayata; Melanie Makhlouf; Casey Trimmer; Ximena Ibarra-Soria; Mona Khan; Laura Van Gerven; Mark Jorissen; Matthew Gibbs; Ciaran O'Flynn; Scott McGrane; Peter Mombaerts; John C Marioni; Joel D Mainland; Darren W Logan
Journal:  Sci Adv       Date:  2019-07-31       Impact factor: 14.136

5.  Sense of Smell: Structural, Functional, Mechanistic Advancements and Challenges in Human Olfactory Research.

Authors:  Anju Sharma; Rajnish Kumar; Imlimaong Aier; Rahul Semwal; Pankaj Tyagi; Pritish Varadwaj
Journal:  Curr Neuropharmacol       Date:  2019       Impact factor: 7.363

6.  OlfactionBase: a repository to explore odors, odorants, olfactory receptors and odorant-receptor interactions.

Authors:  Anju Sharma; Bishal Kumar Saha; Rajnish Kumar; Pritish Kumar Varadwaj
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

7.  Identification of odorant-receptor interactions by global mapping of the human odorome.

Authors:  Karine Audouze; Anne Tromelin; Anne Marie Le Bon; Christine Belloir; Rasmus Koefoed Petersen; Karsten Kristiansen; Søren Brunak; Olivier Taboureau
Journal:  PLoS One       Date:  2014-04-02       Impact factor: 3.240

Review 8.  The state of the art of odorant receptor deorphanization: a report from the orphanage.

Authors:  Zita Peterlin; Stuart Firestein; Matthew E Rogers
Journal:  J Gen Physiol       Date:  2014-04-14       Impact factor: 4.086

9.  ORDB, HORDE, ODORactor and other on-line knowledge resources of olfactory receptor-odorant interactions.

Authors:  Luis Marenco; Rixin Wang; Robert McDougal; Tsviya Olender; Michal Twik; Elspeth Bruford; Xinyi Liu; Jian Zhang; Doron Lancet; Gordon Shepherd; Chiquito Crasto
Journal:  Database (Oxford)       Date:  2016-10-02       Impact factor: 3.451

10.  Bitter Taste and Olfactory Receptors: Beyond Chemical Sensing in the Tongue and the Nose.

Authors:  Mercedes Alfonso-Prieto
Journal:  J Membr Biol       Date:  2021-06-25       Impact factor: 1.843

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