Literature DB >> 21691330

The role of bioinformatics in studying rheumatic and autoimmune disorders.

Marina Sirota1, Atul J Butte.   

Abstract

In the past decade, the availability and abundance of individual-level molecular data, such as gene expression, proteomics and sequence data, has enabled the use of integrative computational approaches to pose and answer novel questions about disease. In this article, we discuss several examples of applications of bioinformatics techniques to study autoimmune and rheumatic disorders. We focus our discussion on how integrative techniques can be applied to analyze gene expression and genetic variation data across different diseases, and discuss the implications of such analyses. We also outline current challenges and future directions of these approaches. We show that integrative computational methods are essential for translational research and provide a powerful opportunity to improve human health by refining the current knowledge about diagnostics, therapeutics and mechanisms of disease pathogenesis.

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Year:  2011        PMID: 21691330     DOI: 10.1038/nrrheum.2011.87

Source DB:  PubMed          Journal:  Nat Rev Rheumatol        ISSN: 1759-4790            Impact factor:   20.543


  40 in total

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2.  Molecular signatures and new candidates to target the pathogenesis of rheumatoid arthritis.

Authors:  U Ungethuem; T Haeupl; H Witt; D Koczan; V Krenn; H Huber; T M von Helversen; M Drungowski; C Seyfert; J Zacher; A Pruss; J Neidel; H Lehrach; H J Thiesen; P Ruiz; S Bläss
Journal:  Physiol Genomics       Date:  2010-09-21       Impact factor: 3.107

Review 3.  Rheumatic diseases: the effects of inflammation on bone.

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Review 4.  Perspectives for computer modeling in the study of T cell activation.

Authors:  Jesse Coward; Ronald N Germain; Grégoire Altan-Bonnet
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-05       Impact factor: 10.005

5.  NCBI GEO: archive for high-throughput functional genomic data.

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Journal:  Nucleic Acids Res       Date:  2008-10-21       Impact factor: 16.971

6.  Disease signatures are robust across tissues and experiments.

Authors:  Joel T Dudley; Robert Tibshirani; Tarangini Deshpande; Atul J Butte
Journal:  Mol Syst Biol       Date:  2009-09-15       Impact factor: 11.429

7.  An Environment-Wide Association Study (EWAS) on type 2 diabetes mellitus.

Authors:  Chirag J Patel; Jayanta Bhattacharya; Atul J Butte
Journal:  PLoS One       Date:  2010-05-20       Impact factor: 3.240

Review 8.  Review of recent genome-wide association scans in lupus.

Authors:  R R Graham; G Hom; W Ortmann; T W Behrens
Journal:  J Intern Med       Date:  2009-06       Impact factor: 8.989

9.  A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus.

Authors:  Damien Chaussabel; Charles Quinn; Jing Shen; Pinakeen Patel; Casey Glaser; Nicole Baldwin; Dorothee Stichweh; Derek Blankenship; Lei Li; Indira Munagala; Lynda Bennett; Florence Allantaz; Asuncion Mejias; Monica Ardura; Ellen Kaizer; Laurence Monnet; Windy Allman; Henry Randall; Diane Johnson; Aimee Lanier; Marilynn Punaro; Knut M Wittkowski; Perrin White; Joseph Fay; Goran Klintmalm; Octavio Ramilo; A Karolina Palucka; Jacques Banchereau; Virginia Pascual
Journal:  Immunity       Date:  2008-07-18       Impact factor: 31.745

Review 10.  Microarray analysis of gene expression in lupus.

Authors:  Mary K Crow; Jay Wohlgemuth
Journal:  Arthritis Res Ther       Date:  2003-10-13       Impact factor: 5.156

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  3 in total

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Authors:  Matthew H Spitzer; Pier Federico Gherardini; Gabriela K Fragiadakis; Nupur Bhattacharya; Robert T Yuan; Andrew N Hotson; Rachel Finck; Yaron Carmi; Eli R Zunder; Wendy J Fantl; Sean C Bendall; Edgar G Engleman; Garry P Nolan
Journal:  Science       Date:  2015-07-10       Impact factor: 47.728

Review 2.  Applications of systems approaches in the study of rheumatic diseases.

Authors:  Ki-Jo Kim; Saseong Lee; Wan-Uk Kim
Journal:  Korean J Intern Med       Date:  2015-02-27       Impact factor: 2.884

3.  A transcriptome atlas and interactive analysis platform for autoimmune disease.

Authors:  Zhuoqiao Shen; Minghao Fang; Wujianan Sun; Meifang Tang; Nianping Liu; Lin Zhu; Qian Liu; Bin Li; Ruoming Sun; Yu Shi; Chuang Guo; Jun Lin; Kun Qu
Journal:  Database (Oxford)       Date:  2022-06-27       Impact factor: 4.462

  3 in total

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