Literature DB >> 21690730

Sequence heterogeneity and the dynamics of molecular motors.

Yariv Kafri1, David R Nelson.   

Abstract

The effect of sequence heterogeneity on the dynamics of molecular motors is reviewed and analysed using a set of recently introduced lattice models. First, we review results for the influence of heterogeneous tracks such as a single strand of DNA or RNA on the dynamics of the motors. We stress how the predicted behaviour might be observed experimentally in anomalous drift and diffusion of motors over a wide range of parameters near the stall force and discuss the extreme limit of strongly biased motors with one-way hopping. We then consider the dynamics in an environment containing a variety of different fuels which supply chemical energy for the motor motion, either on a heterogeneous or on a periodic track. The results for motion along a periodic track are relevant to kinesin motors in a solution with a mixture of different nucleotide triphosphate fuel sources.

Entities:  

Year:  2005        PMID: 21690730     DOI: 10.1088/0953-8984/17/47/016

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  3 in total

1.  The origin of short transcriptional pauses.

Authors:  Martin Depken; Eric A Galburt; Stephan W Grill
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

2.  Optimizing rotary processes in synthetic molecular motors.

Authors:  Edzard M Geertsema; Sense Jan van der Molen; Marco Martens; Ben L Feringa
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-23       Impact factor: 11.205

3.  Nucleosomal arrangement affects single-molecule transcription dynamics.

Authors:  Veronika Fitz; Jaeoh Shin; Christoph Ehrlich; Lucas Farnung; Patrick Cramer; Vasily Zaburdaev; Stephan W Grill
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-24       Impact factor: 11.205

  3 in total

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