Literature DB >> 21686083

Random walk with barriers.

Dmitry S Novikov1, Els Fieremans, Jens H Jensen, Joseph A Helpern.   

Abstract

Restrictions to molecular motion by barriers (membranes) are ubiquitous in porous media, composite materials and biological tissues. A major challenge is to characterize the microstructure of a material or an organism nondestructively using a bulk transport measurement. Here we demonstrate how the long-range structural correlations introduced by permeable membranes give rise to distinct features of transport. We consider Brownian motion restricted by randomly placed and oriented membranes (d - 1 dimensional planes in d dimensions) and focus on the disorder-averaged diffusion propagator using a scattering approach. The renormalization group solution reveals a scaling behavior of the diffusion coefficient for large times, with a characteristically slow inverse square root time dependence for any d. Its origin lies in the strong structural fluctuations introduced by the spatially extended random restrictions, representing a novel universality class of the structural disorder. Our results agree well with Monte Carlo simulations in two dimensions. They can be used to identify permeable barriers as restrictions to transport, and to quantify their permeability and surface area.

Entities:  

Year:  2011        PMID: 21686083      PMCID: PMC3114643          DOI: 10.1038/nphys1936

Source DB:  PubMed          Journal:  Nat Phys        ISSN: 1745-2473            Impact factor:   20.034


Brownian motion in a uniform medium is characterized by a single parameter, the diffusion coefficent D, which is a measure of mean square molecular displacement. A packet of random walkers spreads with time t according to a Gaussian distribution with variance 〈x2〉 = 2Dt. Complexity in the microscopic structure of a sample, such as heterogeneity in diffusive properties and restrictions to molecular motion, results in non-Gaussian evolution1,2. In particular, diffusion becomes dispersive, leading to the time-dependence of the diffusion coefficient D(t). A fundamental question is how specific complexity features manifest themselves in the dispersive dynamics. Random drifts are known to drastically slow the dynamics down to 〈x2〉 ~ ln4 t, thereby suppressing the diffusion, D|→∞ = 0, in one dimension3,4. Their effect in higher dimensions is less profound5–9. Short-range disorder in local diffusion coefficient preserves Gaussian diffusion for t → ∞, resulting in the finite macroscopic diffusion constant D∞ ≡ D(t)|→∞. However, it causes a long-time tail10,11 in the velocity autocorrelator (t) = 〈v(t)v(0)〉 ~ t−(+2)/2, with the power-law exponent depending on the spatial dimensionality d. Equivalently, the diffusivity acquires non-analytic dispersion at low frequencies10,11. Studying dispersive diffusion, therefore, is a way to characterize the type of disorder and of restrictions to molecular motion in a complex sample. Here we consider a novel class of restrictions to diffusion, represented by extended barriers (membranes). Practically, membranes regulate the transport of ions12, water molecules13–16 and gases17 in biological tissues18. Permeable barriers may partition cell membranes, modulating phospholipid motion19–21. Barriers also restrict molecular motion in porous and composite materials22–27. On a fundamental level, extended barriers may introduce significant long-range correlations into the sample structure. We show that these correlations give rise to distinct transport features, qualitatively different from those due to short-range disorder which is a default assumption in the models of transport10,11,28. We develop a minimal model of a d-dimensional medium with spatially extended disorder, assuming that diffusion is restricted by randomly placed and oriented infinite flat membranes with a given permeability, such as in the d = 2 example of Fig. 1. Based on the renormalization group analysis, we find an accurate approximation for the diffusion coefficient as a function of time or frequency, for all membrane concentrations and permeabilities, as confirmed numerically for d = 2 in Fig. 2.
FIG. 1

A fragment of a two-dimensional patch with randomly placed and oriented membranes (one of the disorder realizations used in the simulations).

FIG. 2

Time-dependent diffusion coefficient D(t) for the two-dimensional random medium of Fig. 1. a, Comparison of the RG solution (6), red, with the Monte Carlo simulations, blue, for the set of decreasing permeabilities, corresponding to ζ = 0.5, 1, 2, 4, 10, 20, 40, 100, 200, 400 (top to bottom). The diffusion time τ is marked by blue circles. b, Scaling behavior of D(t). As the strength ζ of the restrictions increases from bottom to top, the numerical curves begin to collapse as a signature of the universal behavior (10). Dashed lines show the ζ → ∞ limits from our RG solution: the “impermeable” limit D(t)/D∞ = 2d τ/t and the scaling limit (10) with . c, Parameters of the scaling limit (10), C2(ζ) (filled circles) and D(ζ) (open circles), determined from the fit of the simulations in b to equation (10), compared with the RG predictions (solid and dashed red lines). Thin solid line is the RG limit .

Remarkably, the spatially extended disorder introduced by the membranes in any d results in a long-term memory, that manifests itself in the long-time tail (t) ~ t−3/2 in the velocity autocorrelator (Fig. 3); in a non-analytic dispersive diffusivity (ω) ≃ D∞ + const · ω1/2 at low frequencies; and in a characteristically slow decrease of the diffusion coefficient, D(t) = D∞ + const · t−1/2 as t → ∞, Fig. 2, causing the mean square displacement to increase as 〈x2〉 ≃ 2D∞t + const · t1/2. The ω1/2 ~ t−1/2 dispersive diffusion is shown to be a consequence of anomalously strong structural fluctuations in a sample with spatially extended barriers. For membranes with finite extent or correlation length r, the signature ω1/2 dispersion will switch to its short-ranged counterpart ω2 after the diffusion length exceeds r.
FIG. 3

Effect of a single membrane. a, Meaning of effective membrane thickness: 2ℓ = D0/κ is the distance by which one should shift the density profile ψ(x) on each side of membrane if one were to heal p the jump discontinuity (1). b, The memory kernel ϕ(t), equation (5), together with its limits for t ≪ τ, and for t ≫ τ.

Our model represents a novel universality class of the structural disorder in classical random media. An essential feature of the ω1/2 ~ t−1/2 dispersion is that, at sufficiently long times, it dominates the short-range disorder contribution for d > 1. Hence, if observed, this dispersion can serve as a “fingerprint” of spatially extended restrictions within the complexity of heterogeneous samples. Practically, such a dependence can manifest itself in a variety of transport measurements, such as the electrical29 or heat conduction, or the diffusion-weighted NMR15.

Model

A membrane is an idealization of a thin slice of a poorly diffusive material, as long as its thickness is negligible compared to the shortest observable diffusion length. In the limit when both the diffusion coefficient D of the membrane material and its thickness l vanish, the ratio κ ≡ D/l is by definition the permeability. The effect of a membrane is described by the boundary condition18,30 Here D0 is the unrestricted diffusion coefficient. The condition (1) means that, at each point r of the membrane, the density ψ of random walkers experiences a jump proportional to the component of the current J along the normal n to the membrane surface. The permeability has the dimensions of velocity. In what follows, we find it useful to associate an effective thickness, 2ℓ = D0/κ, with a membrane. This length scale is defined relative to the free diffusion coefficient D0. Its physical meaning is derived from the condition (1) and is illustrated in Fig. 3a; the membrane indeed appears D0/D ≫ 1 times thicker than its “nominal” vanishing thickness l. Consider now diffusion in a macroscopic sample embedded with multiple membranes, each one imposing the condition (1). The diffusion propagator depends on their number, shape, and spatial distribution. The number of membranes is characterized by the ratio S/V of their total surface area to the sample volume. Here we adopt the convention from the porous media literature16,24: as the random walkers can approach a membrane from both faces, the membrane’s surface area is counted twice in S. The shape and the spatial distribution of the membranes vary greatly depending on the physical context. The distinct dispersive features of transport due to spatially extended restrictions can be captured by making the simplest assumption which also allows us to keep the number of parameters to a minimum. Namely, below we consider the membranes as infinite d − 1 dimensional planes placed and oriented in a completely random (uncorrelated) way, dividing the sample into pores with random shapes, as shown in Fig. 1 for d = 2. In this case, the ratio S/V is all that is needed to characterize the geometry. In what follows, we first outline our main results for the model medium. Next, we derive them, compare with numerical simulations, discuss and generalize.

Results for randomly oriented flat membranes

In the t → ∞ limit, the diffusion becomes Gaussian with the reduced diffusion coefficient Here the dimensionless parameter ζ quantifies the ability of membranes to hinder the diffusion. It is the “volume fraction” occupied by the membranes based on the effective thickness ℓ defined above. The result for D∞ is exact in d = 1, ref. 31. As follows from Fig. 2, it is a good approximation for d > 1, with 1/d in equation (2) arising from the mean-field orientational averaging, cf. Methods section. Strong restrictions correspond to ζ > 1, when the domains of thickness ~ ℓ associated with each membrane overlap, such that transport across a membrane is affected by its neighbors. For finite t, we shift to the frequency representation since the restrictions are stationary. Technically, we focus on the diffusion propagator G averaged over the disorder in positions and orientations of the random membranes. After disorder averaging, the propagator becomes translation invariant. Its pole in the frequency – wave vector representation, , defines the dispersive diffusion coefficient (diffusivity) (ω) which is a retarded response function that relates the disorder-averaged particle current J = −(ω)∂ψ to the density gradient32. The corresponding time-dependent diffusion coefficient is given32 by a contour integration along the real axis with all the singularities in the lower half-plane of complex ω. We find (ω) in three steps. First, we develop a scattering approach for the transmission events described by the boundary conditions (1) at each membrane. Second, we solve the problem perturbatively in the volume fraction ζ at the mean-field level, starting from infinitely permeable limit (ω) ≡ D0. These two steps are done in the Methods section. The resulting diffusivity with and τ = ℓ2/D0 = D0/(2κ)2, is exact in the limit when the correction ζ|ϕ̃(ω)| ≪ 1 is small. This condition holds either for sufficiently permeable membranes, ζ ≪ 1, or at short times for arbitrary permeability. The corresponding velocity autocorrelator (t) = D0 [δ(t) − ζϕ(t)] contains a nonlocal in time memory kernel Fig. 3b, which will be discussed in detail below. At the third step, we extend equation (4) onto the non-perturbative domain ζ ≫ 1 using the real-space renormalization group to account for the multiple transmission events self-consistently, as described below. Thereby we obtain our main result for all ζ,

Effective circuit

Before deriving our main result (6), we note that the perturbative limit (4) can be represented as a simple effective circuit. As the random walkers are uncharged, the current J has only the diffusive component, and the diffusivity (ω) defines its response to a density gradient ∂ψ rather than to a potential bias. With this important distinction29, the (ζ) result (4) can be viewed as an “impedance” Z(ω) of a hypercube L, L−2Z(ω) ≡ 1/(ω) ≈ 1/D0 + nZ(ω), which acts as a one-dimensional disordered transmission line of length L with point impedances Z = ϕ̃(ω)/κ placed at random positions in series, with density n = S/(2V d). Adding independent contributions Z is tied to the Poissonian statistics in the positions of the barriers (see the sections on the origin of the dispersion, and Methods). In the dc limit, a membrane acts as a resistor with the “resistance” 1/κ ≡ Z(0); as ζ = 2ℓn, each membrane effectively adds the length 2ℓ to the original clean wire L if its dc resistance were to match Z(0) ∝ 1/D∞. At finite frequencies the resistor is shunted by the Warburg element33 with the “conductance” independent of the permeability. The Warburg impedance ~ 1/g, first observed at a flat metal electrode in an electrolyte by Kohlrausch34 and Wien35 in the 19th century, is associated with the diffusion-limited response33. Incidentally, the impedance Z(ω) matches the empirical Cole form36,37 with power law exponent .

Renormalization group

To calculate the response (ω) of the disordered transmission line for finite ζ, we employ the following scaling argument, which we first develop for d = 1. Consider a slab of length L with the diffusivity (ω)|. Let us extend the slab to the length L′ = bL, b > 1, and rescale; now the slab’s length L′ in new units is back to L, while the original, shorter slab has length L → L/b. The rescaled slab conductance decreases due to adding extra N′ − N = Nδb membranes, δb = b − 1. The diffusivity is then reduced as according to equation (4), as long as the added membrane density δn = (N/L)δb is small, δb ≪ 1. Since we assumed from the beginning that the membrane positions are uncorrelated, adding a small number of membranes in an uncorrelated way at each step is consistent. Choosing an infinitesimal dn ∝ db, we represent equation (7) in the differential form, obtaining the real-space renormalization group (RG) equation This is a telegraph equation for a disordered transmission line. Equivalently, it can be obtained by adding membranes in small increments δn in a macroscopic sample of a fixed length with bare diffusivity D0, and applying the relation (4), treating all previously added membranes in the effective-medium fashion38–40 at each RG step. The diffusivity thus decreases as long as κ < ∞. In d dimensions, rescaling a hypercube L as in ref. 41 is equivalent to rescaling a d = 1 slab in which the effective one-dimensional membrane concentration n = S/(2V d). At the mean-field level, the problem is always one-dimensional, with the fraction 1/d of membranes exerting full resistance. Integrating equation (8) yields our main result (6). In the dc limit (0) ≡ D∞, the RG flow 1/D∞| = 1/D∞| + (N′ − N)/(κLd) recovers the above exact result (2) for d = 1, if one identifies L with the microscopic scale such that D∞| ≡ D0 (the bare diffusivity) and (N′ − N)/Ld → n, the final membrane density. Written as RG flow, however, the evolution of the diffusivity is not tied to a particular microscopic cutoff; indeed, the diffusivity D∞| can itself originate from “more microscopic” membranes on the scale finer than L, and so forth. We also note an interesting equivalent way of looking at the RG flow: Formally identifying the particle number density ψ entering the diffusion equation with an electrostatic potential, the dc limit corresponds to the electrostatic screening of the one-dimensional electric field (the slope ∂) by the dipoles (membranes acting as double layers). Coarse-graining corresponds to more dipoles contributing to the screening42, which renormalizes the effective dielectric constant, 1 → 1 + ζ.

Regimes for D(t) and numerical simulations

Consider first the most general case, which corresponds to the strong disorder, ζ ≫ 1. In this case, there are three distinct regimes in D(t), Fig. 2, separated by the two time scales, τ ≫ τ, defined below. The initial decrease of the diffusion coefficient exactly reproduces the well-known universal short-time -expansion24. The correction to free diffusion arises from the random walkers within the diffusion length from the barriers; the term ∝ t is the permeability effect27 of flat pore walls. The limit (9) is valid as long as only a small fraction of random walkers has encountered the barriers, i.e. for t ≪ τ, where τ = ā2/2D0 is the diffusion time across the typical pore size ā ≃ 1/n = 2V d/S. Equation (9) follows already from the perturbative limit (4) universally valid for high frequencies, ωτ ≫ 1. It corresponds to the t ≪ τ limit of the memory kernel (5), Fig. 3b, exemplifying negative velocity autocorrelation near a wall43, which diverges as t−1/2 at short t. There is a perfect agreement between theory and simulations in this regime for all ζ. Highly restrictive membranes look completely impermeable for t ≪ τ, where τ = V/(κS) is the residence time18 within a typical pore; in our notation, τ = (ζ/d)τ. As a result, the mean square displacement 〈x2〉 is bounded by ~ ā2, and D(t)/D0 ~ τ/t. For our RG result (6), the “impermeable” behavior occurs for , and yields the purely imaginary ζ-independent limit (ω) ≃ −iωā2 (similar to the purely reactive electrical conductivity), corresponding to D(t)/D0 ≃ 2τ/t, or, equivalently, to D(t)/D∞ ≃ 2d τ/t, Fig. 2b. Both our result (6) and the simulations display the 1/t dependence for ζ ≳ 100, with the theory somewhat overestimating the D(t) obtained from the numerics for very large ζ (as discussed in the Methods section). For times longer than τ, the system becomes aware of the finite leakage across the membranes, with D(t) approaching the limit (2) which can be qualitatively estimated as hopping on a d-dimensional lattice with a step ā over the time τ, D∞ ~ ā2/(τ). Remarkably, the way D(t) approaches D∞ slows down from 1/t to -decrease in any dimensionality d, defining the novel disorder universality class: This follows in our model (6) from in the , with and . The regime (10) can be clearly seen from the simulation results of Fig. 2b where time is in the units of τ for a set of permeabilities. In this limit, the relative deviation [D(t) − D∞]/D∞ ≲ 1. We emphasize that for ζ → ∞, the dependence (10) approaches a universal scaling law with a fixed C = C(∞), which can be represented only in terms of the effective parameters D∞ and τ, independent of the original microscopic parameters D0, κ and S/V. Approaching this law corresponds to the collapse of the simulation curves in Fig. 2b onto one universal curve for ζ ≳ 100 and t ≳ τ. Our RG approximation (6) overestimates the C2(∞) obtained from the fit of the numerical curves to equation (10), as illustrated in Fig. 2c. For finite ζ, the parameters C(ζ) and D∞ [equation (2)] agree with the simulations within about 15% and 30% correspondingly, even in the strongly non-perturbative regime of ζ ≳ 100. For the moderate disorder, ζ ~ 1, the agreement between theory and simulations is very good. The fact that the RG solution works fairly well even when the “small parameter” ζ ≫ 1 can be understood in terms of the flow to the moderately disordered limit with strongly renormalized parameters, D0 → D∞ and τ → τ. Indeed, for t ≫ τ, the medium effectively looks as if it had a decreased diffusion coefficient D∞. This, in turn, reduces the contrast between the diffusion coefficient inside the membrane and of its surroundings, effectively changing D0 → D∞ in the boundary condition (1), thereby reducing the effective thickness ℓ → ℓ̃ = D∞/(2κ) ≃ ℓ/ζ ~ ā down to the mean distance between membranes. Hence, the renormalized disorder strength is reduced, ζ → ζ̃ ≡ Sℓ̃/Vd ~ 1. Likewise, the renormalized time scale τ → τ̃ ≡ ℓ̃2/D0 ~ τ matches the residence time. At this point the perturbative limit (4) is matched. Conversely, when the membranes are highly permeable, ζ ≪ 1, the residence time in a pore is of the order of τ, and the time scale τ defined above becomes obsolete. In this limit, our result (4) becomes exact, the intermediate 1/t regime does not appear, and the short-time behavior (9) directly crosses over to the nonanalytic dispersion of the form (10), which follows from the expansion of C(ζ) using τ = ζ(d/2)τ, and corresponds to the t ≫ τ limit of the kernel (5), Fig. 3b.

Origin of the dispersion

Consider first the perturbative ζ ≪ 1 limit, which already contains the necessary physics. Here the two important time scales are τ and . We first focus on the case t ≪ τ, where adding independent contributions, as done in the Effective circuit and Methods sections, is justified since multiple scatterings off different membranes are not yet important. In this case, the dispersive behavior (11) for τ ≪ t ≪ τ is a result of scattering off individual barriers. As described in the Methods section, it represents slow density equilibration across a barrier, following the t−1/2 decrease of the probability of a random walker to never return to the origin. For longer times t ≫ τ, multi-barrier scatterings determine the time dependence of D(t) which becomes sensitive to spatial correlations between membranes. Indeed, by the time t, the medium is effectively coarse-grained into domains of the size . These domains have slightly different diffusion coefficients D due to a different amount of restrictions falling into them as a result of the disorder. The net diffusion coefficient D(t) ≡ 〈D〉 is the ensemble average over the domains; in d dimensions, D(t) ≃ D∞ + 〈(δD)2〉/dD∞, where δD = D − 〈D〉. The distribution variance 〈(δD)2〉 ~ 1/L(t) scales inversely with the domain volume for the short-range disorder due to the Poissonian statistics, yielding the ω2 ~ t−2 dispersion10,11,44–46. This disorder effect should be contrasted with the much faster decrease of D(t) and (t) in the absence of spatial fluctuations, both for the strictly periodic barriers in d = 1,47,48 and for the single-scale dominated disorder in any d, ref. 32. Remarkably, the spatially extended disorder introduced in this work produces qualitatively stronger fluctuations in the coarse-grained distribution of {D}, with the variance 〈(δD)2〉 ~ 1/L(t) decreasing much slower than 1/L(t) in d > 1. This signature scaling in fact holds for any ζ, resulting in the ω1/2 ~ t−1/2 dispersion as long as L(t) ≫ ā, both for t ≫ τ (when ζ ≪ 1) and for t ≫ τ (when ζ ≳ 1). To see this, one can first assume the membranes oriented normal to the orthogonal basis vectors (with otherwise random positions). In this basis, the eigenvalues of the isotropic diffusion tensor correspond to the d = 1 disorder, with the scaling 〈(δD)2〉 ~ 1/L(t) due to the Poissonian disorder along each basis direction, effectively bringing us back to the d = 1 case10,11,44–46. The observed ω1/2 ~ t−1/2 dispersion attests to the fact that tilting each membrane in a random direction (Fig. 1) does not qualitatively alter this scaling. Finally, we note that the above single-barrier and coarse-graining pictures are equivalent for our model, i.e. the connection with the return-to-origin probability can be formally extended onto t ≫ τ or t ≫ τ, by substituting the rest of the system via a “featureless” effective medium with diffusivity D∞. Indeed, by adopting the lattice calculation44 to barriers randomly placed on a line, we observe that the prefactor C1(ζ) for ζ ≪ 1, and, with it, equation (11), is exact in d = 1. This means that, for ζ ≪ 1, adding independent barrier contributions in a mean-field way (4) is fully compatible with the Poissonian statistics of the disorder for L(t) ≫ ā. For finite ζ, the equivalence between the Poissonian disorder in barrier positions and the return-to-origin probability persists in the RG solution, as it is utilized at every RG step (7). As a result, these two pictures remain equivalent even in the ζ ≫ 1 limit, after the effective-medium substitution τ → τ, yielding the scaling behavior (10) for all ζ and t.

Outlook

In this work we have introduced a novel disorder class, the extended disorder, represented by straight permeable membranes which are randomly placed and oriented. A random medium of this type has dispersive diffusion (ω) = D∞ + const · ω1/2 in any dimensionality d as a result of anomalously strong structural fluctuations. According to the coarse-graining argument, any medium with extended structural blocks (e.g. infinite membranes with finite thickness) falls into this class. The ω1/2 dispersion for d > 1 is notably more singular than its well studied ω2 counterparts arising due to short-range disorder10,11. As the ω1/2 singularity originates from long-range spatial correlations introduced by the membranes, the dispersive behavior of the form (10) will persist in a variety of samples with random extended restrictions, and will become increasingly important for longer diffusion times when the contributions from short-range disorder components vanish. However, the behavior (10) will eventually terminate if the membranes cease to be extended past their intrinsic correlation radius r, i.e. for , when the structural memory is forgotten, and the short-range dispersion ω2 of a coarse-grained random medium sets in.

Methods

A single barrier in one dimension

The boundary condition (1) can be represented as a local scattering term in the diffusion equation Here δ′(x) is the derivative of the Dirac delta-function at the position x = 0 of the membrane. We focus on the Green’s function of the problem (12), defined by the initial condition = δ(x − x′). As the problem is stationary, we shift to the frequency domain, ∂ → −iω. In this representation, the Green’s function is formally an operator inverse where the coordinates x play a role of indices in infinite-dimensional matrices, and the free propagator The result of inversion (13) is the Born series where the exact vertex V (the T-matrix) satisfies the Dyson’s equation, which in the Fourier representation reads In our case, the bare vertex is separable, The solution of equation (16), the exact vertex Throughout this work, ω is understood as having an infinitesimal positive imaginary part +i0 due to causality; this way the retarded response functions are analytic in the upper-half-plane of the complex variable ω. The ω1/2 singularity in ϕ̃(ω) parallels that of the energy-dependent quantum scattering off a localized potential λδ(x) in one dimension, identifying iω → ε + i0. In the quantum problem, however, energy comes with a negative power ε−1/2 in the denominator of the corresponding exact vertex λ̃(ε), so that the high-energy scattering corresponds to the Born limit λ̃ → λ, whereas the low-energy amplitude . For the diffusion, the Born approximation V → V corresponds to the dc limit, whereas at high frequencies , as the scope of the p barrier is reduced down to the particles within the diffusion length .

Return to origin probability and impedance

The Green’s function describes the density equilibration after injecting a unit packet of random walkers at the point x0 at t = 0. For x0 > 0, the excess number of walkers that has not yet leaked out across the barrier, asymptotically follows the survival probability of a particle released at a distance x̃0 = x0 + ℓ, to never return to the origin. This relation is valid for , such that the resulting density gradient is uniform on either side of the barrier, and relaxes as t−1/2, following the fraction Psurv(t, x̃0) of the walkers who have managed to wander around the “biased” side (x > 0) and have not yet encountered the barrier. The finite permeability κ in this picture is substituted by the minimal effective distance to the origin, and perfect transmission. The leakage current , where p(t) = −Ṗsurv(t; x0 + ℓ) is the probability density for time intervals t between successive returns to the origin. For x0 ≪ ℓ, (Fig. 3b). In general, driving the current J0(ω), e.g. by the source J0(ω) [δ(x − x0) − δ(x + x0)], results in the current J(ω) = ϕ̃(ω) J0(ω) across the barrier for . The “potential drop” −Δψ(ω) ≡ J(ω)/κ = Z(ω)J0(ω) across the barrier is then related to J0(ω) via the “impedance” Z(ω) = ϕ̃(ω)/κ. The excess current in the previous example is equivalent to , yielding .

Multiple barriers

Averaging over positions of randomly placed barriers with concentration n is done in a standard way1,2,10,11,28,32, by introducing the self-energy part Σ, On the mean-field level, we keep in Σ only the exact interaction vertex with a single barrier, The mean-field approximation is correct in the first order in barrier concentration n = S/2V for all frequencies, as justified in the section on the origin of the dispersion. The self-energy shifts the pole of the propagator G, thereby changing the diffusive dynamics due to disorder-averaged interaction with random membranes. Remarkably, on this level there are no higher-order terms in powers of q2. This allows us to represent interaction with membranes solely as renormalization of the effective diffusivity D0 → (ω), equation (4), which acquires frequency dependence ϕ̃(ω) dictated by that of the vertex (18). The role of (ω) is similar to that played by the dispersive refraction index. Indeed, the relation (20) is analogous to the mean-field relation between the refraction index and the forward scattering amplitude49. In our case, the presence of “scatterers” (barriers) introduces the memory kernel (5) into the current-density response. In higher dimensions d > 1, averaging is performed both over positions of the barrier in the direction n normal to its surface, and over its orientations. This amounts to a frequency shift , Σ = (S/2V)V();, with q = q − (qn)n the conserved momentum parallel to the barrier, and subsequent orientational average Σ ≡ 〈Σ〉. Substituting the latter self-energy part in equation (19), obtain the result (4) for any d.

Effective medium picture

The RG approach assumes that the boundary condition (1) is adjusted accordingly, D0 → (ω)| at each RG scale L. Strictly speaking, this is valid only for sufficiently small frequencies , corresponding to diffusing past many membranes, when the system can be treated as a uniform effective medium at each RG step. Luckily, for the opposite case of large frequencies the full result (6) matches the exact limit (4), corresponding to the original boundary condition (1). This allows us to keep the frequency simply as a parameter in equation (8). From this discussion one expects that the agreement of the RG result (6) with the simulations to be the worst in the intermediate regime, when , equivalent to t ~ τ. Fig. 2a shows that the discrepancy between the RG result and the simulations is indeed highest around t ~ τ and remains under 25%. The agreement improves for t ≫ τ to within 10% even for the largest ζ. We note that in d = 1, the RG limit C1(∞) overestimates the exact result for the one-dimensional lattice model11,44–46, , by the factor of two. We also observe this in the one-dimensional simulations (not shown). There are no exact results for this problem for d > 1. As it is often true with mean-field-like description, the accuracy of our solution is likely to improve for increasing d. This is consistent with the notably better agreement (Fig. 2c) of the theoretically obtained coefficient C2(ζ) with that determined from the d = 2 simulations. Monte Carlo dynamics was realized on a square patch with periodic boundary conditions, embedded with randomly placed and oriented membranes, cf. Fig. 1, of nearly identical S/V in each disorder realization. For every ζ value in Fig. 2, the diffusion coefficient D(t) was calculated by averaging the displacement variance 〈x2〉, cf. equation (3), over a total of 4 × 105 random walkers evenly split between 40 disorder realizations, with an average of 385 membranes per patch. The trajectory of each random walker was a sequence of moves in a randomly chosen direction over a distance during a time step dt, with the total diffusion time t up to 100 τ, corresponding to a maximum of 4 × 106 time steps per walker. Transmission across a membrane occurred with probability P ∝ κdr/D0 ≪ 1, cf. refs. 30,50. The disorder strength ζ was varied by changing κ. The time step dt for each ζ was chosen so that P < 0.007, and the ratio dr/ā = Sdr/4V < 0.1. We calibrated our results for a quasi-one-dimensional disorder (random parallel membranes), which reproduced the exact limit (2) with about 1% accuracy. The random walk simulator was developed in C++. Simulations were performed on the NYU General Cluster. With an average of 200 CPU cores used simultaneously, all simulations took a total of about 100 hours.
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Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

Review 6.  Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules.

Authors:  Akihiro Kusumi; Chieko Nakada; Ken Ritchie; Kotono Murase; Kenichi Suzuki; Hideji Murakoshi; Rinshi S Kasai; Junko Kondo; Takahiro Fujiwara
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

7.  Fluorescence correlation spectroscopy diffusion laws to probe the submicron cell membrane organization.

Authors:  Laure Wawrezinieck; Hervé Rigneault; Didier Marguet; Pierre-François Lenne
Journal:  Biophys J       Date:  2005-09-30       Impact factor: 4.033

8.  ALTERNATING CURRENT CONDUCTANCE AND DIRECT CURRENT EXCITATION OF NERVE.

Authors:  K S Cole
Journal:  Science       Date:  1934-02-16       Impact factor: 47.728

9.  Quantitative in vivo assessment of lung microstructure at the alveolar level with hyperpolarized 3He diffusion MRI.

Authors:  Dmitriy A Yablonskiy; Alexander L Sukstanskii; Jason C Leawoods; David S Gierada; G Larry Bretthorst; Stephen S Lefrak; Joel D Cooper; Mark S Conradi
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

10.  Phospholipids undergo hop diffusion in compartmentalized cell membrane.

Authors:  Takahiro Fujiwara; Ken Ritchie; Hideji Murakoshi; Ken Jacobson; Akihiro Kusumi
Journal:  J Cell Biol       Date:  2002-06-10       Impact factor: 10.539

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  43 in total

1.  Dynamic diffusion-tensor measurements in muscle tissue using the single-line multiple-echo diffusion-tensor acquisition technique at 3T.

Authors:  Steven H Baete; Gene Y Cho; Eric E Sigmund
Journal:  NMR Biomed       Date:  2015-04-22       Impact factor: 4.044

2.  A single-shot measurement of time-dependent diffusion over sub-millisecond timescales using static field gradient NMR.

Authors:  Teddy X Cai; Nathan H Williamson; Velencia J Witherspoon; Rea Ravin; Peter J Basser
Journal:  J Chem Phys       Date:  2021-03-21       Impact factor: 3.488

3.  Revealing mesoscopic structural universality with diffusion.

Authors:  Dmitry S Novikov; Jens H Jensen; Joseph A Helpern; Els Fieremans
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-24       Impact factor: 11.205

4.  Retrieving neuronal orientations using 3D scanning SAXS and comparison with diffusion MRI.

Authors:  Marios Georgiadis; Aileen Schroeter; Zirui Gao; Manuel Guizar-Sicairos; Dmitry S Novikov; Els Fieremans; Markus Rudin
Journal:  Neuroimage       Date:  2019-09-27       Impact factor: 6.556

5.  Quantitative theory for the transverse relaxation time of blood water.

Authors:  Wenbo Li; Peter C M van Zijl
Journal:  NMR Biomed       Date:  2020-02-05       Impact factor: 4.044

6.  Time-dependent diffusion in skeletal muscle with the random permeable barrier model (RPBM): application to normal controls and chronic exertional compartment syndrome patients.

Authors:  Eric E Sigmund; Dmitry S Novikov; Dabang Sui; Obehi Ukpebor; Steven Baete; James S Babb; Kecheng Liu; Thorsten Feiweier; Jane Kwon; Kellyanne McGorty; Jenny Bencardino; Els Fieremans
Journal:  NMR Biomed       Date:  2014-03-09       Impact factor: 4.044

7.  Quantifying myofiber integrity using diffusion MRI and random permeable barrier modeling in skeletal muscle growth and Duchenne muscular dystrophy model in mice.

Authors:  Kerryanne V Winters; Olivier Reynaud; Dmitry S Novikov; Els Fieremans; Sungheon Gene Kim
Journal:  Magn Reson Med       Date:  2018-03-25       Impact factor: 4.668

8.  Precise Inference and Characterization of Structural Organization (PICASO) of tissue from molecular diffusion.

Authors:  Lipeng Ning; Evren Özarslan; Carl-Fredrik Westin; Yogesh Rathi
Journal:  Neuroimage       Date:  2016-10-14       Impact factor: 6.556

Review 9.  Diffusion-weighted breast MRI: Clinical applications and emerging techniques.

Authors:  Savannah C Partridge; Noam Nissan; Habib Rahbar; Averi E Kitsch; Eric E Sigmund
Journal:  J Magn Reson Imaging       Date:  2016-09-30       Impact factor: 4.813

10.  Pulsed and oscillating gradient MRI for assessment of cell size and extracellular space (POMACE) in mouse gliomas.

Authors:  Olivier Reynaud; Kerryanne Veronica Winters; Dung Minh Hoang; Youssef Zaim Wadghiri; Dmitry S Novikov; Sungheon Gene Kim
Journal:  NMR Biomed       Date:  2016-07-22       Impact factor: 4.044

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