Literature DB >> 21685281

Draft genome sequence of Kocuria rhizophila P7-4.

Woo-Jin Kim1, Young-Ok Kim, Dae-Soo Kim, Sang-Haeng Choi, Dong-Wook Kim, Jun-Seo Lee, Hee Jeong Kong, Bo-Hye Nam, Bong-Seok Kim, Sang-Jun Lee, Hong-Seog Park, Sung-Hwa Chae.   

Abstract

We report the draft genome sequence of Kocuria rhizophila P7-4, which was isolated from the intestine of Siganus doliatus caught in the Pacific Ocean. The 2.83-Mb genome sequence consists of 75 large contigs (>100 bp in size) and contains 2,462 predicted protein-coding genes.

Entities:  

Mesh：

Year:  2011        PMID： 21685281      PMCID： PMC3147690          DOI： 10.1128/JB.05334-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  10 in total

1.  Identifying bacterial genes and endosymbiont DNA with Glimmer.

Authors:  Arthur L Delcher; Kirsten A Bratke; Edwin C Powers; Steven L Salzberg
Journal:  Bioinformatics       Date:  2007-01-19       Impact factor: 6.937

2.  Complete genome sequence of the soil actinomycete Kocuria rhizophila.

Authors:  Hiromi Takarada; Mitsuo Sekine; Hiroki Kosugi; Yasunori Matsuo; Takatomo Fujisawa; Seiha Omata; Emi Kishi; Ai Shimizu; Naofumi Tsukatani; Satoshi Tanikawa; Nobuyuki Fujita; Shigeaki Harayama
Journal:  J Bacteriol       Date:  2008-04-11       Impact factor: 3.490

Review 3.  A genomic perspective on protein families.

Authors:  R L Tatusov; E V Koonin; D J Lipman
Journal:  Science       Date:  1997-10-24       Impact factor: 47.728

Review 4.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

5.  A rapid alkaline extraction procedure for screening recombinant plasmid DNA.

Authors:  H C Birnboim; J Doly
Journal:  Nucleic Acids Res       Date:  1979-11-24       Impact factor: 16.971

6.  Kocuria palustris sp. nov. and Kocuria rhizophila sp. nov., isolated from the rhizoplane of the narrow-leaved cattail (Typha angustifolia).

Authors:  G Kovács; J Burghardt; S Pradella; P Schumann; E Stackebrandt; K Màrialigeti
Journal:  Int J Syst Bacteriol       Date:  1999-01

7.  Kocuria marina sp. nov., a novel actinobacterium isolated from marine sediment.

Authors:  Seung Bum Kim; Olga I Nedashkovskaya; Valery V Mikhailov; Suk Kyun Han; Kyoung-Ok Kim; Moon-Soo Rhee; Kyung Sook Bae
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

8.  Reclassification of ATCC 9341 from Micrococcus luteus to Kocuria rhizophila.

Authors:  Jane S Tang; Patrick M Gillevet
Journal:  Int J Syst Evol Microbiol       Date:  2003-07       Impact factor: 2.747

9.  RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Authors:  Karin Lagesen; Peter Hallin; Einar Andreas Rødland; Hans-Henrik Staerfeldt; Torbjørn Rognes; David W Ussery
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  The RAST Server: rapid annotations using subsystems technology.

Authors:  Ramy K Aziz; Daniela Bartels; Aaron A Best; Matthew DeJongh; Terrence Disz; Robert A Edwards; Kevin Formsma; Svetlana Gerdes; Elizabeth M Glass; Michael Kubal; Folker Meyer; Gary J Olsen; Robert Olson; Andrei L Osterman; Ross A Overbeek; Leslie K McNeil; Daniel Paarmann; Tobias Paczian; Bruce Parrello; Gordon D Pusch; Claudia Reich; Rick Stevens; Olga Vassieva; Veronika Vonstein; Andreas Wilke; Olga Zagnitko
Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969
  10 in total
  5 in total

1.  High-quality draft genome sequence of Kocuria marina SO9-6, an actinobacterium isolated from a copper mine.

Authors:  Daniel B A Castro; Letícia Bianca Pereira; Marcus Vinícius M E Silva; Bárbara P da Silva; Bruna Rafaella Z Palermo; Camila Carlos; Daiane R B Belgini; Elmer Erasmo G Limache; Gileno V Jr Lacerda; Mariana B P Nery; Milene B Gomes; Salatiel S de Souza; Thiago M da Silva; Viviane D Rodrigues; Luciana C Paulino; Renato Vicentini; Lúcio F C Ferraz; Laura M M Ottoboni
Journal:  Genom Data       Date:  2015-05-16

2.  Complete genome sequence of Kocuria rhizophila BT304, isolated from the small intestine of castrated beef cattle.

Authors:  Tae Woong Whon; Hyun Sik Kim; Jin-Woo Bae
Journal:  Gut Pathog       Date:  2018-09-27       Impact factor: 4.181

3.  Genome Sequence of Kocuria varians G6 Isolated from a Slaughterhouse in Denmark.

Authors:  Prem K Raghupathi; Jakob Herschend; Henriette L Røder; Søren J Sørensen; Mette Burmølle
Journal:  Genome Announc       Date:  2016-03-31

4.  Draft Genome Sequences of Two Kocuria Isolates, K. salsicia G1 and K. rhizophila G2, Isolated from a Slaughterhouse in Denmark.

Authors:  Jakob Herschend; Prem K Raghupathi; Henriette L Røder; Søren J Sørensen; Mette Burmølle
Journal:  Genome Announc       Date:  2016-03-31

5.  Comparative Genomics Provides Insights Into the Marine Adaptation in Sponge-Derived Kocuriaflava S43.

Authors:  Wei Sun; Changrong Liu; Fengli Zhang; Mingzhu Zhao; Zhiyong Li
Journal:  Front Microbiol       Date:  2018-06-08       Impact factor: 5.640
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.