Literature DB >> 21671162

Advances in epigenetics and epigenomics for neurodegenerative diseases.

Irfan A Qureshi1, Mark F Mehler.   

Abstract

In the post-genomic era, epigenetic factors-literally those that are "over" or "above" genetic ones and responsible for controlling the expression and function of genes-have emerged as important mediators of development and aging; gene-gene and gene-environmental interactions; and the pathophysiology of complex disease states. Here, we provide a brief overview of the major epigenetic mechanisms (ie, DNA methylation, histone modifications and chromatin remodeling, and non-coding RNA regulation). We highlight the nearly ubiquitous profiles of epigenetic dysregulation that have been found in Alzheimer's and other neurodegenerative diseases. We also review innovative methods and technologies that enable the characterization of individual epigenetic modifications and more widespread epigenomic states at high resolution. We conclude that, together with complementary genetic, genomic, and related approaches, interrogating epigenetic and epigenomic profiles in neurodegenerative diseases represent important and increasingly practical strategies for advancing our understanding of and the diagnosis and treatment of these disorders.

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Year:  2011        PMID: 21671162      PMCID: PMC4461866          DOI: 10.1007/s11910-011-0210-2

Source DB:  PubMed          Journal:  Curr Neurol Neurosci Rep        ISSN: 1528-4042            Impact factor:   5.081


  86 in total

Review 1.  The widespread regulation of microRNA biogenesis, function and decay.

Authors:  Jacek Krol; Inga Loedige; Witold Filipowicz
Journal:  Nat Rev Genet       Date:  2010-07-27       Impact factor: 53.242

Review 2.  Phenotypic plasticity and the epigenetics of human disease.

Authors:  Andrew P Feinberg
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

3.  Delivery of molecular beacons for live-cell imaging and analysis of RNA.

Authors:  Antony K Chen; Won Jong Rhee; Gang Bao; Andrew Tsourkas
Journal:  Methods Mol Biol       Date:  2011

4.  Hypomethylation of the amyloid precursor protein gene in the brain of an Alzheimer's disease patient.

Authors:  R L West; J M Lee; L E Maroun
Journal:  J Mol Neurosci       Date:  1995       Impact factor: 3.444

5.  The methylation status of cytosines in a tau gene promoter region alters with age to downregulate transcriptional activity in human cerebral cortex.

Authors:  H Tohgi; K Utsugisawa; Y Nagane; M Yoshimura; M Ukitsu; Y Genda
Journal:  Neurosci Lett       Date:  1999-11-12       Impact factor: 3.046

Review 6.  TDP-43 and FUS/TLS: emerging roles in RNA processing and neurodegeneration.

Authors:  Clotilde Lagier-Tourenne; Magdalini Polymenidou; Don W Cleveland
Journal:  Hum Mol Genet       Date:  2010-04-15       Impact factor: 6.150

7.  Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase.

Authors:  Mohammad Ali Faghihi; Farzaneh Modarresi; Ahmad M Khalil; Douglas E Wood; Barbara G Sahagan; Todd E Morgan; Caleb E Finch; Georges St Laurent; Paul J Kenny; Claes Wahlestedt
Journal:  Nat Med       Date:  2008-06-29       Impact factor: 53.440

8.  A microRNA-based gene dysregulation pathway in Huntington's disease.

Authors:  Rory Johnson; Chiara Zuccato; Nikolai D Belyaev; Deborah J Guest; Elena Cattaneo; Noel J Buckley
Journal:  Neurobiol Dis       Date:  2007-11-13       Impact factor: 5.996

9.  Variants of the elongator protein 3 (ELP3) gene are associated with motor neuron degeneration.

Authors:  Claire L Simpson; Robin Lemmens; Katarzyna Miskiewicz; Wendy J Broom; Valerie K Hansen; Paul W J van Vught; John E Landers; Peter Sapp; Ludo Van Den Bosch; Joanne Knight; Benjamin M Neale; Martin R Turner; Jan H Veldink; Roel A Ophoff; Vineeta B Tripathi; Ana Beleza; Meera N Shah; Petroula Proitsi; Annelies Van Hoecke; Peter Carmeliet; H Robert Horvitz; P Nigel Leigh; Christopher E Shaw; Leonard H van den Berg; Pak C Sham; John F Powell; Patrik Verstreken; Robert H Brown; Wim Robberecht; Ammar Al-Chalabi
Journal:  Hum Mol Genet       Date:  2008-11-07       Impact factor: 6.150

10.  Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells.

Authors:  Madeleine P Ball; Jin Billy Li; Yuan Gao; Je-Hyuk Lee; Emily M LeProust; In-Hyun Park; Bin Xie; George Q Daley; George M Church
Journal:  Nat Biotechnol       Date:  2009-03-29       Impact factor: 54.908

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  23 in total

Review 1.  At the Crossroads Between Neurodegeneration and Cancer: A Review of Overlapping Biology and Its Implications.

Authors:  Alexander L Houck; Sahba Seddighi; Jane A Driver
Journal:  Curr Aging Sci       Date:  2018

Review 2.  Aberrant regulation of DNA methylation in amyotrophic lateral sclerosis: a new target of disease mechanisms.

Authors:  Lee J Martin; Margaret Wong
Journal:  Neurotherapeutics       Date:  2013-10       Impact factor: 7.620

3.  The Role of Histone Deacetylase 6 in Synaptic Plasticity and Memory.

Authors:  Sarah Perry; Beril Kiragasi; Dion Dickman; Anandasankar Ray
Journal:  Cell Rep       Date:  2017-02-07       Impact factor: 9.423

Review 4.  Towards the prevention of potential aluminum toxic effects and an effective treatment for Alzheimer's disease.

Authors:  Maire E Percy; Theo P A Kruck; Aileen I Pogue; Walter J Lukiw
Journal:  J Inorg Biochem       Date:  2011-08-19       Impact factor: 4.155

Review 5.  The impact of histone post-translational modifications in neurodegenerative diseases.

Authors:  Samantha N Cobos; Seth A Bennett; Mariana P Torrente
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2018-10-20       Impact factor: 5.187

Review 6.  The fate is not always written in the genes: epigenomics in epidemiologic studies.

Authors:  Scott M Langevin; Karl T Kelsey
Journal:  Environ Mol Mutagen       Date:  2013-02-26       Impact factor: 3.216

7.  Aberrant signature methylome by DNMT1 hot spot mutation in hereditary sensory and autonomic neuropathy 1E.

Authors:  Zhifu Sun; Yanhong Wu; Tamas Ordog; Saurabh Baheti; Jinfu Nie; Xiaohui Duan; Kaori Hojo; Jean-Pierre Kocher; Peter J Dyck; Christopher J Klein
Journal:  Epigenetics       Date:  2014-07-07       Impact factor: 4.528

8.  Expression of microRNAs in human post-mortem amyotrophic lateral sclerosis spinal cords provides insight into disease mechanisms.

Authors:  Claudia Figueroa-Romero; Junguk Hur; J Simon Lunn; Ximena Paez-Colasante; Diane E Bender; Raymond Yung; Stacey A Sakowski; Eva L Feldman
Journal:  Mol Cell Neurosci       Date:  2015-12-17       Impact factor: 4.314

Review 9.  Epigenetics of Aging and Alzheimer's Disease: Implications for Pharmacogenomics and Drug Response.

Authors:  Ramón Cacabelos; Clara Torrellas
Journal:  Int J Mol Sci       Date:  2015-12-21       Impact factor: 5.923

10.  Epigenome-wide association study for Parkinson's disease.

Authors:  Kerry Moore; Amy Jayne McKnight; David Craig; Francis O'Neill
Journal:  Neuromolecular Med       Date:  2014-10-11       Impact factor: 3.843

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