Literature DB >> 21669915

Flammeovirga pacifica sp. nov., isolated from deep-sea sediment.

Hui Xu1, Yuanyuan Fu1, Ning Yang1, Zhixin Ding2,1, Qiliang Lai1, Runying Zeng1.   

Abstract

Strain WPAGA1T was isolated from marine sediment of the west Pacific Ocean. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate belonged to the genus Flammeovirga. Strain WPAGA1T exhibited highest 16S rRNA gene sequence similarity with Flammeovirga yaeyamensis NBRC 100898(T) (98.1 %) and lower sequence similarity with Flammeovirga arenaria IFO 15982T (94.6 %) and other members of the genus Flammeovirga (<94.2 %). DNA-DNA relatedness studies showed that strain WPAGA1T was distinct from F. yaeyamensis NBRC 100898T and F. arenaria NBRC 15982T (43±4 % and 32±2 % relatedness values, respectively). Strain WPAGA1T could be distinguished from all known members of the genus Flammeovirga by a number of phenotypic features. However, the dominant fatty acids of strain WPAGA1T (iso-C15:0, C16:0 and C20:4ω6,9,12,15c), the major polyamine (cadaverine) and the G+C content of the chromosomal DNA (32.9 mol%) were consistent with those of members of the genus Flammeovirga. Based on phenotypic and chemotaxonomic features and 16S rRNA gene sequences, strain WPAGA1T can be assigned to the genus Flammeovirga as a representative of a novel species, for which the name Flammeovirga pacifica sp. nov. is proposed; the type strain is WPAGA1T (=CCTCC AB 2010364T=LMG 26175T=DSM 24597T=MCCC 1A06425T).

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Year:  2011        PMID: 21669915     DOI: 10.1099/ijs.0.030676-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  8 in total

1.  Novel Alginate Lyase (Aly5) from a Polysaccharide-Degrading Marine Bacterium, Flammeovirga sp. Strain MY04: Effects of Module Truncation on Biochemical Characteristics, Alginate Degradation Patterns, and Oligosaccharide-Yielding Properties.

Authors:  Wenjun Han; Jingyan Gu; Yuanyuan Cheng; Huihui Liu; Yuezhong Li; Fuchuan Li
Journal:  Appl Environ Microbiol       Date:  2015-10-30       Impact factor: 4.792

2.  An extra peptide within the catalytic module of a β-agarase affects the agarose degradation pattern.

Authors:  Wen-Jun Han; Jing-Yan Gu; Hui-Hui Liu; Fu-Chuan Li; Zhi-Hong Wu; Yue-Zhong Li
Journal:  J Biol Chem       Date:  2013-02-01       Impact factor: 5.157

3.  Biochemical Characteristics and Substrate Degradation Pattern of a Novel Exo-Type β-Agarase from the Polysaccharide-Degrading Marine Bacterium Flammeovirga sp. Strain MY04.

Authors:  Wenjun Han; Yuanyuan Cheng; Dandan Wang; Shumin Wang; Huihui Liu; Jingyan Gu; Zhihong Wu; Fuchuan Li
Journal:  Appl Environ Microbiol       Date:  2016-07-29       Impact factor: 4.792

4.  Genome sequence of a high agarase-producing strain Flammeovirga sp. SJP92.

Authors:  Qi Dong; Lingwei Ruan; Hong Shi
Journal:  Stand Genomic Sci       Date:  2017-01-26

5.  Biochemical Characteristics and Variable Alginate-Degrading Modes of a Novel Bifunctional Endolytic Alginate Lyase.

Authors:  Yuanyuan Cheng; Dandan Wang; Jingyan Gu; Junge Li; Huihui Liu; Fuchuan Li; Wenjun Han
Journal:  Appl Environ Microbiol       Date:  2017-11-16       Impact factor: 4.792

6.  Genome Sequencing Reveals the Complex Polysaccharide-Degrading Ability of Novel Deep-Sea Bacterium Flammeovirga pacifica WPAGA1.

Authors:  Boliang Gao; Min Jin; Li Li; Wu Qu; Runying Zeng
Journal:  Front Microbiol       Date:  2017-04-10       Impact factor: 5.640

Review 7.  Properties and Applications of Extremozymes from Deep-Sea Extremophilic Microorganisms: A Mini Review.

Authors:  Min Jin; Yingbao Gai; Xun Guo; Yanping Hou; Runying Zeng
Journal:  Mar Drugs       Date:  2019-11-21       Impact factor: 5.118

8.  A Novel Bifunctional Endolytic Alginate Lyase with Variable Alginate-Degrading Modes and Versatile Monosaccharide-Producing Properties.

Authors:  Chune Peng; Qingbin Wang; Danrong Lu; Wenjun Han; Fuchuan Li
Journal:  Front Microbiol       Date:  2018-02-08       Impact factor: 5.640

  8 in total

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