Literature DB >> 21669837

Recent advances in crustacean genomics.

Jonathon H Stillman1, John K Colbourne, Carol E Lee, Nipam H Patel, Michelle R Phillips, David W Towle, Brian D Eads, Greg W Gelembuik, Raymond P Henry, Eric A Johnson, Michael E Pfrender, Nora B Terwilliger.   

Abstract

Crustaceans are a diverse and ancient group of arthropods that have long been studied as interesting model systems in biology, especially for understanding animal evolution and physiology and for environmentally relevant studies. Like many model systems, advances in DNA-sequencing methodologies have led to a large amount of genomics-related projects. The purpose of this article is to highlight the genome projects and functional genomics (transcriptomics) projects that are currently underway in crustacean biology. Specifically, we have surveyed the amount of publicly available DNA sequence data (both genomic and EST data) across all crustacean taxa for which a significant number of DNA sequences have been generated. Several ongoing projects are presented including the ecology of invasive species, thermal physiology, ion and water balance, ecology and evolutionary biology, and developmental biology.

Year:  2008        PMID: 21669837     DOI: 10.1093/icb/icn096

Source DB:  PubMed          Journal:  Integr Comp Biol        ISSN: 1540-7063            Impact factor:   3.326


  13 in total

Review 1.  Here We Are, But Where Do We Go? A Systematic Review of Crustacean Transcriptomic Studies from 2014-2015.

Authors:  Justin C Havird; Scott R Santos
Journal:  Integr Comp Biol       Date:  2016-07-08       Impact factor: 3.326

2.  A survey of well conserved families of C2H2 zinc-finger genes in Daphnia.

Authors:  Arun Seetharam; Yang Bai; Gary W Stuart
Journal:  BMC Genomics       Date:  2010-04-30       Impact factor: 3.969

3.  The porcelain crab transcriptome and PCAD, the porcelain crab microarray and sequence database.

Authors:  Abderrahmane Tagmount; Mei Wang; Erika Lindquist; Yoshihiro Tanaka; Kristen S Teranishi; Shinichi Sunagawa; Mike Wong; Jonathon H Stillman
Journal:  PLoS One       Date:  2010-02-19       Impact factor: 3.240

4.  Construction and Characterization of Two Novel Transcriptome Assemblies in the Congeneric Porcelain Crabs Petrolisthes cinctipes and P. manimaculis.

Authors:  Eric J Armstrong; Jonathon H Stillman
Journal:  Integr Comp Biol       Date:  2016-07-03       Impact factor: 3.326

5.  Differential gene expression during the moult cycle of Antarctic krill (Euphausia superba).

Authors:  Paul J Seear; Geraint A Tarling; Gavin Burns; William P Goodall-Copestake; Edward Gaten; Ozge Ozkaya; Ezio Rosato
Journal:  BMC Genomics       Date:  2010-10-19       Impact factor: 3.969

6.  Moult cycle specific differential gene expression profiling of the crab Portunus pelagicus.

Authors:  Anna V Kuballa; Timothy A Holton; Brian Paterson; Abigail Elizur
Journal:  BMC Genomics       Date:  2011-03-12       Impact factor: 3.969

7.  De novo assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis.

Authors:  Victor Zeng; Karina E Villanueva; Ben S Ewen-Campen; Frederike Alwes; William E Browne; Cassandra G Extavour
Journal:  BMC Genomics       Date:  2011-11-25       Impact factor: 3.969

8.  Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare.

Authors:  Frédéric Chevalier; Juline Herbinière-Gaboreau; Delphine Charif; Guillaume Mitta; Frédéric Gavory; Patrick Wincker; Pierre Grève; Christine Braquart-Varnier; Didier Bouchon
Journal:  BMC Microbiol       Date:  2012-01-18       Impact factor: 3.605

9.  Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata.

Authors:  Nathan J Kenny; Yung Wa Sin; Xin Shen; Qu Zhe; Wei Wang; Ting Fung Chan; Stephen S Tobe; Sebastian M Shimeld; Ka Hou Chu; Jerome H L Hui
Journal:  Mar Drugs       Date:  2014-03-11       Impact factor: 5.118

10.  A first AFLP-based genetic linkage map for brine shrimp Artemia franciscana and its application in mapping the sex locus.

Authors:  Stephanie De Vos; Peter Bossier; Gilbert Van Stappen; Ilse Vercauteren; Patrick Sorgeloos; Marnik Vuylsteke
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

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