Literature DB >> 21668972

Global analysis of gene expression in mineralizing fish vertebra-derived cell lines: new insights into anti-mineralogenic effect of vanadate.

Daniel M Tiago1, Vincent Laizé, Luca Bargelloni, Serena Ferraresso, Chiara Romualdi, M Leonor Cancela.   

Abstract

BACKGROUND: Fish has been deemed suitable to study the complex mechanisms of vertebrate skeletogenesis and gilthead seabream (Sparus aurata), a marine teleost with acellular bone, has been successfully used in recent years to study the function and regulation of bone and cartilage related genes during development and in adult animals. Tools recently developed for gilthead seabream, e.g. mineralogenic cell lines and a 4 × 44K Agilent oligo-array, were used to identify molecular determinants of in vitro mineralization and genes involved in anti-mineralogenic action of vanadate.
RESULTS: Global analysis of gene expression identified 4,223 and 4,147 genes differentially expressed (fold change - FC > 1.5) during in vitro mineralization of VSa13 (pre-chondrocyte) and VSa16 (pre-osteoblast) cells, respectively. Comparative analysis indicated that nearly 45% of these genes are common to both cell lines and gene ontology (GO) classification is also similar for both cell types. Up-regulated genes (FC > 10) were mainly associated with transport, matrix/membrane, metabolism and signaling, while down-regulated genes were mainly associated with metabolism, calcium binding, transport and signaling. Analysis of gene expression in proliferative and mineralizing cells exposed to vanadate revealed 1,779 and 1,136 differentially expressed genes, respectively. Of these genes, 67 exhibited reverse patterns of expression upon vanadate treatment during proliferation or mineralization.
CONCLUSIONS: Comparative analysis of expression data from fish and data available in the literature for mammalian cell systems (bone-derived cells undergoing differentiation) indicate that the same type of genes, and in some cases the same orthologs, are involved in mechanisms of in vitro mineralization, suggesting their conservation throughout vertebrate evolution and across cell types. Array technology also allowed identification of genes differentially expressed upon exposure of fish cell lines to vanadate and likely involved in its anti-mineralogenic activity. Many were found to be unknown or they were never associated to bone homeostasis previously, thus providing a set of potential candidates whose study will likely bring insights into the complex mechanisms of tissue mineralization and bone formation.

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Year:  2011        PMID: 21668972      PMCID: PMC3141667          DOI: 10.1186/1471-2164-12-310

Source DB:  PubMed          Journal:  BMC Genomics        ISSN: 1471-2164            Impact factor:   3.969


  36 in total

1.  Transcriptional profiling of human osteoblast differentiation.

Authors:  J Billiard; R A Moran; M Z Whitley; M Chatterjee-Kishore; K Gillis; E L Brown; B S Komm; P V N Bodine
Journal:  J Cell Biochem       Date:  2003-05-15       Impact factor: 4.429

Review 2.  Fishing for gene function--endocrine modelling in the zebrafish.

Authors:  I M McGonnell; R C Fowkes
Journal:  J Endocrinol       Date:  2006-06       Impact factor: 4.286

3.  Discovery of osteoblast-associated genes using cDNA microarrays.

Authors:  A Raouf; A Seth
Journal:  Bone       Date:  2002-03       Impact factor: 4.398

4.  Microarray analyses of gene expression during chondrocyte differentiation identifies novel regulators of hypertrophy.

Authors:  Claudine G James; C Thomas G Appleton; Veronica Ulici; T Michael Underhill; Frank Beier
Journal:  Mol Biol Cell       Date:  2005-08-31       Impact factor: 4.138

Review 5.  Mechanisms balancing skeletal matrix synthesis and degradation.

Authors:  Harry C Blair; Mone Zaidi; Paul H Schlesinger
Journal:  Biochem J       Date:  2002-06-01       Impact factor: 3.857

6.  Construction of a robust microarray from a non-model species (largemouth bass) using pyrosequencing technology.

Authors:  Natàlia Garcia-Reyero; Robert J Griffitt; Li Liu; Kevin J Kroll; William G Farmerie; David S Barber; Nancy D Denslow
Journal:  J Fish Biol       Date:  2008-06-28       Impact factor: 2.051

7.  Impairment of mineralization by metavanadate and decavanadate solutions in a fish bone-derived cell line.

Authors:  Daniel M Tiago; Vincent Laizé; M Leonor Cancela; Manuel Aureliano
Journal:  Cell Biol Toxicol       Date:  2007-09-25       Impact factor: 6.691

8.  Radiographic analysis of zebrafish skeletal defects.

Authors:  Shannon Fisher; Pudur Jagadeeswaran; Marnie E Halpern
Journal:  Dev Biol       Date:  2003-12-01       Impact factor: 3.582

9.  Production and utilization of a high-density oligonucleotide microarray in channel catfish, Ictalurus punctatus.

Authors:  Robert W Li; Geoffrey C Waldbieser
Journal:  BMC Genomics       Date:  2006-06-01       Impact factor: 3.969

10.  Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Authors:  Yulei Wang; Catalin Barbacioru; Fiona Hyland; Wenming Xiao; Kathryn L Hunkapiller; Julie Blake; Frances Chan; Carolyn Gonzalez; Lu Zhang; Raymond R Samaha
Journal:  BMC Genomics       Date:  2006-03-21       Impact factor: 3.969

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  3 in total

1.  Development of an in vitro cell system from zebrafish suitable to study bone cell differentiation and extracellular matrix mineralization.

Authors:  Parameswaran Vijayakumar; Vincent Laizé; João Cardeira; Marlene Trindade; M Leonor Cancela
Journal:  Zebrafish       Date:  2013-08-02       Impact factor: 1.985

2.  Cells Isolated from Regenerating Caudal Fin of Sparus aurata Can Differentiate into Distinct Bone Cell Lineages.

Authors:  Parameswaran Vijayakumar; João Cardeira; Vincent Laizé; Paulo J Gavaia; M Leonor Cancela
Journal:  Mar Biotechnol (NY)       Date:  2020-02-20       Impact factor: 3.619

Review 3.  Screening of Mineralogenic and Osteogenic Compounds in Zebrafish-Tools to Improve Assay Throughput and Data Accuracy.

Authors:  Joana T Rosa; Marco Tarasco; Paulo J Gavaia; M Leonor Cancela; Vincent Laizé
Journal:  Pharmaceuticals (Basel)       Date:  2022-08-10
  3 in total

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