Literature DB >> 21666600

Epigenetically coordinated GATA2 binding is necessary for endothelium-specific endomucin expression.

Yasuharu Kanki1, Takahide Kohro, Shuying Jiang, Shuichi Tsutsumi, Imari Mimura, Jun-Ichi Suehiro, Youichiro Wada, Yoshihiro Ohta, Sigeo Ihara, Hiroko Iwanari, Makoto Naito, Takao Hamakubo, Hiroyuki Aburatani, Tatsuhiko Kodama, Takashi Minami.   

Abstract

GATA2 is well recognized as a key transcription factor and regulator of cell-type specificity and differentiation. Here, we carried out comparative chromatin immunoprecipitation with comprehensive sequencing (ChIP-seq) to determine genome-wide occupancy of GATA2 in endothelial cells and erythroids, and compared the occupancy to the respective gene expression profile in each cell type. Although GATA2 was commonly expressed in both cell types, different GATA2 bindings and distinct cell-specific gene expressions were observed. By using the ChIP-seq with epigenetic histone modifications and chromatin conformation capture assays; we elucidated the mechanistic regulation of endothelial-specific GATA2-mediated endomucin gene expression, that was regulated by the endothelial-specific chromatin loop with a GATA2-associated distal enhancer and core promoter. Knockdown of endomucin markedly attenuated endothelial cell growth, migration and tube formation. Moreover, abrogation of GATA2 in endothelium demonstrated not only a reduction of endothelial-specific markers, but also induction of mesenchymal transition promoting gene expression. Our findings provide new insights into the correlation of endothelial-expressed GATA2 binding, epigenetic modification, and the determination of endothelial cell specificity.

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Year:  2011        PMID: 21666600      PMCID: PMC3155306          DOI: 10.1038/emboj.2011.173

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  53 in total

1.  Transforming growth factor-beta 1-mediated inhibition of the flk-1/KDR gene is mediated by a 5'-untranslated region palindromic GATA site.

Authors:  T Minami; R D Rosenberg; W C Aird
Journal:  J Biol Chem       Date:  2000-11-29       Impact factor: 5.157

2.  Insights into GATA-1-mediated gene activation versus repression via genome-wide chromatin occupancy analysis.

Authors:  Ming Yu; Laura Riva; Huafeng Xie; Yocheved Schindler; Tyler B Moran; Yong Cheng; Duonan Yu; Ross Hardison; Mitchell J Weiss; Stuart H Orkin; Bradley E Bernstein; Ernest Fraenkel; Alan B Cantor
Journal:  Mol Cell       Date:  2009-11-25       Impact factor: 17.970

3.  Identification of human endomucin-1 and -2 as membrane-bound O-sialoglycoproteins with anti-adhesive activity.

Authors:  M Kinoshita; T Nakamura; M Ihara; T Haraguchi; Y Hiraoka; K Tashiro; M Noda
Journal:  FEBS Lett       Date:  2001-06-15       Impact factor: 4.124

4.  Endomucin is expressed in embryonic dorsal aorta and is able to inhibit cell adhesion.

Authors:  M Ueno; K Igarashi; N Kimura; K Okita; M Takizawa; I Nobuhisa; T Kojima; T Kitamura; U Samulowitz; D Vestweber; T Shimomura; T Suda; K Nakashima; T Taga
Journal:  Biochem Biophys Res Commun       Date:  2001-09-21       Impact factor: 3.575

5.  Vascular bed-specific regulation of the von Willebrand factor promoter in the heart and skeletal muscle.

Authors:  Ju Liu; Lei Yuan; Grietje Molema; Erzsébet Regan; Lauren Janes; David Beeler; Katherine C Spokes; Yoshiaki Okada; Takashi Minami; Peter Oettgen; William C Aird
Journal:  Blood       Date:  2010-10-27       Impact factor: 22.113

6.  Histone deacetylase 3 associates with and represses the transcription factor GATA-2.

Authors:  Y Ozawa; M Towatari; S Tsuzuki; F Hayakawa; T Maeda; Y Miyata; M Tanimoto; H Saito
Journal:  Blood       Date:  2001-10-01       Impact factor: 22.113

7.  Genome-wide interrogation of hepatic FXR reveals an asymmetric IR-1 motif and synergy with LRH-1.

Authors:  Hansook Kim Chong; Aniello M Infante; Young-Kyo Seo; Tae-Il Jeon; Yanqiao Zhang; Peter A Edwards; Xiaohui Xie; Timothy F Osborne
Journal:  Nucleic Acids Res       Date:  2010-05-18       Impact factor: 16.971

8.  Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding.

Authors:  Dominic Schmidt; Michael D Wilson; Benoit Ballester; Petra C Schwalie; Gordon D Brown; Aileen Marshall; Claudia Kutter; Stephen Watt; Celia P Martinez-Jimenez; Sarah Mackay; Iannis Talianidis; Paul Flicek; Duncan T Odom
Journal:  Science       Date:  2010-04-08       Impact factor: 47.728

9.  ENCODE whole-genome data in the UCSC genome browser (2011 update).

Authors:  Brian J Raney; Melissa S Cline; Kate R Rosenbloom; Timothy R Dreszer; Katrina Learned; Galt P Barber; Laurence R Meyer; Cricket A Sloan; Venkat S Malladi; Krishna M Roskin; Bernard B Suh; Angie S Hinrichs; Hiram Clawson; Ann S Zweig; Vanessa Kirkup; Pauline A Fujita; Brooke Rhead; Kayla E Smith; Andy Pohl; Robert M Kuhn; Donna Karolchik; David Haussler; W James Kent
Journal:  Nucleic Acids Res       Date:  2010-10-30       Impact factor: 16.971

10.  Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.

Authors:  Kimberly R Blahnik; Lei Dou; Henriette O'Geen; Timothy McPhillips; Xiaoqin Xu; Alina R Cao; Sushma Iyengar; Charles M Nicolet; Bertram Ludäscher; Ian Korf; Peggy J Farnham
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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  40 in total

1.  Loss-of-function germline GATA2 mutations in patients with MDS/AML or MonoMAC syndrome and primary lymphedema reveal a key role for GATA2 in the lymphatic vasculature.

Authors:  Jan Kazenwadel; Genevieve A Secker; Yajuan J Liu; Jill A Rosenfeld; Robert S Wildin; Jennifer Cuellar-Rodriguez; Amy P Hsu; Sarah Dyack; Conrad V Fernandez; Chan-Eng Chong; Milena Babic; Peter G Bardy; Akiko Shimamura; Michael Y Zhang; Tom Walsh; Steven M Holland; Dennis D Hickstein; Marshall S Horwitz; Christopher N Hahn; Hamish S Scott; Natasha L Harvey
Journal:  Blood       Date:  2011-12-06       Impact factor: 22.113

2.  Dynamic change of chromatin conformation in response to hypoxia enhances the expression of GLUT3 (SLC2A3) by cooperative interaction of hypoxia-inducible factor 1 and KDM3A.

Authors:  Imari Mimura; Masaomi Nangaku; Yasuharu Kanki; Shuichi Tsutsumi; Tsuyoshi Inoue; Takahide Kohro; Shogo Yamamoto; Takanori Fujita; Teppei Shimamura; Jun-ichi Suehiro; Akashi Taguchi; Mika Kobayashi; Kyoko Tanimura; Takeshi Inagaki; Toshiya Tanaka; Takao Hamakubo; Juro Sakai; Hiroyuki Aburatani; Tatsuhiko Kodama; Youichiro Wada
Journal:  Mol Cell Biol       Date:  2012-05-29       Impact factor: 4.272

3.  Genome-wide approaches reveal functional vascular endothelial growth factor (VEGF)-inducible nuclear factor of activated T cells (NFAT) c1 binding to angiogenesis-related genes in the endothelium.

Authors:  Jun-ichi Suehiro; Yasuharu Kanki; Chihiro Makihara; Keri Schadler; Mai Miura; Yuuka Manabe; Hiroyuki Aburatani; Tatsuhiko Kodama; Takashi Minami
Journal:  J Biol Chem       Date:  2014-08-25       Impact factor: 5.157

4.  The calcineurin-NFAT-angiopoietin-2 signaling axis in lung endothelium is critical for the establishment of lung metastases.

Authors:  Takashi Minami; Shuying Jiang; Keri Schadler; Jun-Ichi Suehiro; Tsuyoshi Osawa; Yuichi Oike; Mai Miura; Makoto Naito; Tatsuhiko Kodama; Sandra Ryeom
Journal:  Cell Rep       Date:  2013-08-15       Impact factor: 9.423

Review 5.  Transcriptional regulation of endothelial cell and vascular development.

Authors:  Changwon Park; Tae Min Kim; Asrar B Malik
Journal:  Circ Res       Date:  2013-05-10       Impact factor: 17.367

6.  Genetic framework for GATA factor function in vascular biology.

Authors:  Amelia K Linnemann; Henriette O'Geen; Sunduz Keles; Peggy J Farnham; Emery H Bresnick
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-01       Impact factor: 11.205

7.  Cis-element mutated in GATA2-dependent immunodeficiency governs hematopoiesis and vascular integrity.

Authors:  Kirby D Johnson; Amy P Hsu; Myung-Jeom Ryu; Jinyong Wang; Xin Gao; Meghan E Boyer; Yangang Liu; Youngsook Lee; Katherine R Calvo; Sunduz Keles; Jing Zhang; Steven M Holland; Emery H Bresnick
Journal:  J Clin Invest       Date:  2012-09-10       Impact factor: 14.808

8.  Cooperative interaction of Etv2 and Gata2 regulates the development of endothelial and hematopoietic lineages.

Authors:  Xiaozhong Shi; Jai Richard; Katie M Zirbes; Wuming Gong; Gufa Lin; Michael Kyba; Jamie A Thomson; Naoko Koyano-Nakagawa; Daniel J Garry
Journal:  Dev Biol       Date:  2014-02-26       Impact factor: 3.582

9.  GATA2 is required for lymphatic vessel valve development and maintenance.

Authors:  Jan Kazenwadel; Kelly L Betterman; Chan-Eng Chong; Philippa H Stokes; Young K Lee; Genevieve A Secker; Yan Agalarov; Cansaran Saygili Demir; David M Lawrence; Drew L Sutton; Sebastien P Tabruyn; Naoyuki Miura; Marjo Salminen; Tatiana V Petrova; Jacqueline M Matthews; Christopher N Hahn; Hamish S Scott; Natasha L Harvey
Journal:  J Clin Invest       Date:  2015-07-27       Impact factor: 14.808

10.  Role of DNA methyltransferase 1 on the altered eNOS expression in human umbilical endothelium from intrauterine growth restricted fetuses.

Authors:  Bernardo J Krause; Paula M Costello; Ernesto Muñoz-Urrutia; Karen A Lillycrop; Mark A Hanson; Paola Casanello
Journal:  Epigenetics       Date:  2013-07-18       Impact factor: 4.528

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