Literature DB >> 21664408

Bifunctional transfer-messenger RNA.

Kenneth C Keiler1, Nitya S Ramadoss.   

Abstract

Transfer-messenger RNA (tmRNA) is a bifunctional RNA that has properties of a tRNA and an mRNA. tmRNA uses these two functions to release ribosomes stalled during translation and target the nascent polypeptides for degradation. This concerted reaction, known as trans-translation, contributes to translational quality control and regulation of gene expression in bacteria. tmRNA is conserved throughout bacteria, and is one of the most abundant RNAs in the cell, suggesting that trans-translation is of fundamental importance for bacterial fitness. Mutants lacking tmRNA activity typically have severe phenotypes, including defects in viability, virulence, and responses to environmental stresses.
Copyright © 2011 Elsevier Masson SAS. All rights reserved.

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Year:  2011        PMID: 21664408      PMCID: PMC3175250          DOI: 10.1016/j.biochi.2011.05.029

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  66 in total

1.  Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu.

Authors:  J Rudinger-Thirion; R Giegé; B Felden
Journal:  RNA       Date:  1999-08       Impact factor: 4.942

2.  SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

Authors:  A W Karzai; M M Susskind; R T Sauer
Journal:  EMBO J       Date:  1999-07-01       Impact factor: 11.598

3.  Resuming translation on tmRNA: a unique mode of determining a reading frame.

Authors:  K P Williams; K A Martindale; D P Bartel
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

4.  Stepping transfer messenger RNA through the ribosome.

Authors:  Olga V Shpanchenko; Maria I Zvereva; Pavel V Ivanov; Elizaveta Y Bugaeva; Alexey S Rozov; Alexey A Bogdanov; Markus Kalkum; Leif A Isaksson; Knud H Nierhaus; Olga A Dontsova
Journal:  J Biol Chem       Date:  2005-02-15       Impact factor: 5.157

5.  Ribosome rescue: tmRNA tagging activity and capacity in Escherichia coli.

Authors:  Sean D Moore; Robert T Sauer
Journal:  Mol Microbiol       Date:  2005-10       Impact factor: 3.501

6.  Cell cycle-regulated degradation of tmRNA is controlled by RNase R and SmpB.

Authors:  Sue-Jean Hong; Quyen-Anh Tran; Kenneth C Keiler
Journal:  Mol Microbiol       Date:  2005-07       Impact factor: 3.501

7.  Prolyl-tRNA(Pro) in the A-site of SecM-arrested ribosomes inhibits the recruitment of transfer-messenger RNA.

Authors:  Fernando Garza-Sánchez; Brian D Janssen; Christopher S Hayes
Journal:  J Biol Chem       Date:  2006-09-12       Impact factor: 5.157

8.  Protein tagging at rare codons is caused by tmRNA action at the 3' end of nonstop mRNA generated in response to ribosome stalling.

Authors:  Xia Li; Rieko Hirano; Hideaki Tagami; Hiroji Aiba
Journal:  RNA       Date:  2005-12-22       Impact factor: 4.942

9.  Genetic analysis of the structure and function of transfer messenger RNA pseudoknot 1.

Authors:  Douglas R Tanner; Jonathan D Dewey; Mickey R Miller; Allen R Buskirk
Journal:  J Biol Chem       Date:  2006-02-15       Impact factor: 5.157

10.  Colocation of genes encoding a tRNA-mRNA hybrid and a putative signaling peptide on complementary strands in the genome of the hyperthermophilic bacterium Thermotoga maritima.

Authors:  Clemente I Montero; Derrick L Lewis; Matthew R Johnson; Shannon B Conners; Elizabeth A Nance; Jason D Nichols; Robert M Kelly
Journal:  J Bacteriol       Date:  2006-10       Impact factor: 3.490

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  10 in total

Review 1.  Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning.

Authors:  Pavel V Baranov; John F Atkins; Martina M Yordanova
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

2.  Small molecule inhibitors of trans-translation have broad-spectrum antibiotic activity.

Authors:  Nitya S Ramadoss; John N Alumasa; Lin Cheng; Yu Wang; Sharon Li; Benjamin S Chambers; Hoon Chang; Arnab K Chatterjee; Achim Brinker; Ingo H Engels; Kenneth C Keiler
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-03       Impact factor: 11.205

3.  The transfer-messenger RNA-small protein B system plays a role in avian pathogenic Escherichia coli pathogenicity.

Authors:  Xiaohui Mu; Haixia Huan; Huiqing Xu; Qingqing Gao; Liping Xiong; Ruxia Gao; Song Gao; Xiufan Liu
Journal:  J Bacteriol       Date:  2013-09-06       Impact factor: 3.490

4.  Inhibitors of Ribosome Rescue Arrest Growth of Francisella tularensis at All Stages of Intracellular Replication.

Authors:  Tyler D P Goralski; Kalyan K Dewan; John N Alumasa; Victoria Avanzato; David E Place; Rachel L Markley; Bhuvana Katkere; Seham M Rabadi; Chandra Shekhar Bakshi; Kenneth C Keiler; Girish S Kirimanjeswara
Journal:  Antimicrob Agents Chemother       Date:  2016-05-23       Impact factor: 5.191

5.  A computational strategy for the search of regulatory small RNAs in Actinobacillus pleuropneumoniae.

Authors:  Ciro C Rossi; Janine T Bossé; Yanwen Li; Adam A Witney; Kate A Gould; Paul R Langford; Denise M S Bazzolli
Journal:  RNA       Date:  2016-07-11       Impact factor: 4.942

Review 6.  Bacterial degrons in synthetic circuits.

Authors:  Prajakta Jadhav; Yanyan Chen; Nicholas Butzin; Javier Buceta; Arantxa Urchueguía
Journal:  Open Biol       Date:  2022-08-17       Impact factor: 7.124

7.  tmRNA is essential in Shigella flexneri.

Authors:  Nitya S Ramadoss; Xin Zhou; Kenneth C Keiler
Journal:  PLoS One       Date:  2013-02-25       Impact factor: 3.240

Review 8.  The importance of proteins of the RNase II/RNB-family in pathogenic bacteria.

Authors:  Rute G Matos; Cátia Bárria; Ricardo N Moreira; Susana Barahona; Susana Domingues; Cecília M Arraiano
Journal:  Front Cell Infect Microbiol       Date:  2014-06-03       Impact factor: 5.293

9.  Analysis of the antimicrobial mechanism of porcine beta defensin 2 against E. coli by electron microscopy and differentially expressed genes.

Authors:  Rui-Bo Chen; Kun Zhang; Heng Zhang; Chun-Yu Gao; Chun-Li Li
Journal:  Sci Rep       Date:  2018-10-02       Impact factor: 4.379

10.  Comparison of Proteomic Responses as Global Approach to Antibiotic Mechanism of Action Elucidation.

Authors:  Christoph H R Senges; Jennifer J Stepanek; Michaela Wenzel; Nadja Raatschen; Ümran Ay; Yvonne Märtens; Pascal Prochnow; Melissa Vázquez Hernández; Abdulkadir Yayci; Britta Schubert; Niklas B M Janzing; Helen L Warmuth; Martin Kozik; Jens Bongard; John N Alumasa; Bauke Albada; Maya Penkova; Tadeja Lukežič; Nohemy A Sorto; Nicole Lorenz; Reece G Miller; Bingyao Zhu; Martin Benda; Jörg Stülke; Sina Schäkermann; Lars I Leichert; Kathi Scheinpflug; Heike Brötz-Oesterhelt; Christian Hertweck; Jared T Shaw; Hrvoje Petković; Jean M Brunel; Kenneth C Keiler; Nils Metzler-Nolte; Julia E Bandow
Journal:  Antimicrob Agents Chemother       Date:  2020-12-16       Impact factor: 5.191

  10 in total

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