Literature DB >> 2166042

Minimal DNA requirement for topoisomerase II-mediated cleavage in vitro.

K Lund1, A H Andersen, K Christiansen, J Q Svejstrup, O Westergaard.   

Abstract

The minimal DNA requirement for topoisomerase II-mediated DNA cleavage in vitro was determined by analyzing the interaction of the enzyme with sets of DNA substrates varying successively by single bases at the 5'- or 3'-end of either strand. A 16-base pair double-stranded region was established as the minimal duplex region required for topoisomerase II cleavage activity. The region was located symmetrically around the 4-base staggered cleavage site. Topoisomerase II-mediated cleavage within the 16-base pair core duplex, however, required single-stranded regions flanking the duplex to either the 5'- or 3'-sides, or an extension at both ends of the duplex with 1 or more base pairs.

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Year:  1990        PMID: 2166042

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  11 in total

1.  Position-specific effect of ribonucleotides on the cleavage activity of human topoisomerase II.

Authors:  Y Wang; A Thyssen; O Westergaard; A H Andersen
Journal:  Nucleic Acids Res       Date:  2000-12-15       Impact factor: 16.971

2.  Sequence requirements for mammalian topoisomerase II mediated DNA cleavage stimulated by an ellipticine derivative.

Authors:  P Fossé; B René; M Le Bret; C Paoletti; J M Saucier
Journal:  Nucleic Acids Res       Date:  1991-06-11       Impact factor: 16.971

3.  DNA gyrase can cleave short DNA fragments in the presence of quinolone drugs.

Authors:  M E Cove; A P Tingey; A Maxwell
Journal:  Nucleic Acids Res       Date:  1997-07-15       Impact factor: 16.971

4.  Single-molecule measurements of the opening and closing of the DNA gate by eukaryotic topoisomerase II.

Authors:  R Derike Smiley; Tammy R L Collins; Gordon G Hammes; Tao-Shih Hsieh
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-14       Impact factor: 11.205

5.  Influence of minor groove binders on the eukaryotic topoisomerase II cleavage reaction with 41 base pair model oligonucleotides.

Authors:  A Bell; L Kittler; G Löber; C Zimmer
Journal:  Invest New Drugs       Date:  1996       Impact factor: 3.850

Review 6.  The use of divalent metal ions by type II topoisomerases.

Authors:  Joseph E Deweese; Neil Osheroff
Journal:  Metallomics       Date:  2010-05-21       Impact factor: 4.526

7.  Using 3'-bridging phosphorothiolates to isolate the forward DNA cleavage reaction of human topoisomerase IIalpha.

Authors:  Joseph E Deweese; Alex B Burgin; Neil Osheroff
Journal:  Biochemistry       Date:  2008-03-05       Impact factor: 3.162

8.  Mutational analysis of a type II topoisomerase cleavage site: distinct requirements for enzyme and inhibitors.

Authors:  C H Freudenreich; K N Kreuzer
Journal:  EMBO J       Date:  1993-05       Impact factor: 11.598

9.  Hairpin structures formed by alpha satellite DNA of human centromeres are cleaved by human topoisomerase IIalpha.

Authors:  Anette Thyssen Jonstrup; Tina Thomsen; Yong Wang; Birgitta R Knudsen; Jørn Koch; Anni H Andersen
Journal:  Nucleic Acids Res       Date:  2008-09-29       Impact factor: 16.971

Review 10.  Analysis of the eukaryotic topoisomerase II DNA gate: a single-molecule FRET and structural perspective.

Authors:  Tammy R L Collins; Gordon G Hammes; Tao-Shih Hsieh
Journal:  Nucleic Acids Res       Date:  2009-01-20       Impact factor: 16.971

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