Literature DB >> 21655563

The effect of leaving group on mechanistic preference in phosphate monoester hydrolysis.

Shina C L Kamerlin1, John Wilkie.   

Abstract

We present 2-dimensional potential energy surfaces and optimised transition states (TS) for water attack on a series of substituted phosphate monoester monoanions at the DFT level of theory, comparing a standard 6-31++g(d,p) basis set with a larger triple-zeta (augmented cc-pVTZ) basis set. Small fluorinated model compounds are used to simulate increasing leaving group stability without adding further geometrical complexity to the system. We demonstrate that whilst changing the leaving group causes little qualitative change in the potential energy surfaces (with the exception of the system with the most electron withdrawing leaving group, CF(3)O(-), in which the associative pathway changes from a stepwise A(N) + D(N) pathway to a concerted A(N)D(N) pathway), there is a quantitative change in relative gas-phase and solution barriers for the two competing pathways. In line with previous studies, in the case of OCH(3), the barriers for the associative and dissociative pathways are similar in solution, and the two pathways are equally viable and indistinguishable in solution. However, significantly increasing the stability of the leaving group (decreasing proton affinity, PA) results in the progressive favouring of a stepwise dissociative, D(N) + A(N), mechanism over associative mechanisms.

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Year:  2011        PMID: 21655563     DOI: 10.1039/c0ob01210f

Source DB:  PubMed          Journal:  Org Biomol Chem        ISSN: 1477-0520            Impact factor:   3.876


  3 in total

1.  Mechanistic Insights on Human Phosphoglucomutase Revealed by Transition Path Sampling and Molecular Dynamics Calculations.

Authors:  Natércia F Brás; Pedro A Fernandes; Maria J Ramos; Steven D Schwartz
Journal:  Chemistry       Date:  2018-01-04       Impact factor: 5.236

Review 2.  Why nature really chose phosphate.

Authors:  Shina C L Kamerlin; Pankaz K Sharma; Ram B Prasad; Arieh Warshel
Journal:  Q Rev Biophys       Date:  2013-01-15       Impact factor: 5.318

3.  Resolving apparent conflicts between theoretical and experimental models of phosphate monoester hydrolysis.

Authors:  Fernanda Duarte; Johan Åqvist; Nicholas H Williams; Shina C L Kamerlin
Journal:  J Am Chem Soc       Date:  2014-11-25       Impact factor: 15.419

  3 in total

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