Literature DB >> 21651249

Variable selection in discriminant partial least-squares analysis.

B K Alsberg1, D B Kell, R Goodacre.   

Abstract

Variable selection enhances the understanding and interpretability of multivariate classification models. A new chemometric method based on the selection of the most important variables in discriminant partial least-squares (VS-DPLS) analysis is described. The suggested method is a simple extension of DPLS where a small number of elements in the weight vector w is retained for each factor. The optimal number of DPLS factors is determined by cross-validation. The new algorithm is applied to four different high-dimensional spectral data sets with excellent results. Spectral profiles from Fourier transform infrared spectroscopy and pyrolysis mass spectrometry are used. To investigate the uniqueness of the selected variables an iterative VS-DPLS procedure is performed. At each iteration, the previously found selected variables are removed to see if a new VS-DPLS classification model can be constructed using a different set of variables. In this manner, it is possible to determine regions rather than individual variables that are important for a successful classification.

Entities:  

Year:  1998        PMID: 21651249     DOI: 10.1021/ac980506o

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  11 in total

1.  Comprehensive detection and discrimination of Campylobacter species by use of confocal micro-Raman spectroscopy and multilocus sequence typing.

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Journal:  J Clin Microbiol       Date:  2012-06-27       Impact factor: 5.948

2.  On-site variety discrimination of tomato plant using visible-near infrared reflectance spectroscopy.

Authors:  Hui-rong Xu; Peng Yu; Xia-ping Fu; Yi-Bin Ying
Journal:  J Zhejiang Univ Sci B       Date:  2009-02       Impact factor: 3.066

Review 3.  Biochemical individuality reflected in chromatographic, electrophoretic and mass-spectrometric profiles.

Authors:  Milos V Novotny; Helena A Soini; Yehia Mechref
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2008-04-15       Impact factor: 3.205

4.  Barcoding bacterial cells: A SERS based methodology for pathogen identification.

Authors:  I S Patel; W R Premasiri; D T Moir; L D Ziegler
Journal:  J Raman Spectrosc       Date:  2008-11       Impact factor: 3.133

5.  MALDI-TOF mass spectrometry as a tool for the discrimination of high-risk Escherichia coli clones from phylogenetic groups B2 (ST131) and D (ST69, ST405, ST393).

Authors:  Â Novais; C Sousa; J de Dios Caballero; A Fernandez-Olmos; J Lopes; H Ramos; T M Coque; R Cantón; L Peixe
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2014-03-07       Impact factor: 3.267

6.  A Partial Least Squares based algorithm for parsimonious variable selection.

Authors:  Tahir Mehmood; Harald Martens; Solve Sæbø; Jonas Warringer; Lars Snipen
Journal:  Algorithms Mol Biol       Date:  2011-12-05       Impact factor: 1.405

7.  Diverse high-risk B2 and D Escherichia coli clones depicted by Fourier Transform Infrared Spectroscopy.

Authors:  Clara Sousa; Ângela Novais; Ana Magalhães; João Lopes; Luísa Peixe
Journal:  Sci Rep       Date:  2013-11-20       Impact factor: 4.379

Review 8.  Machine Learning Methods for Analysis of Metabolic Data and Metabolic Pathway Modeling.

Authors:  Miroslava Cuperlovic-Culf
Journal:  Metabolites       Date:  2018-01-11

Review 9.  Chemometric Methods for Spectroscopy-Based Pharmaceutical Analysis.

Authors:  Alessandra Biancolillo; Federico Marini
Journal:  Front Chem       Date:  2018-11-21       Impact factor: 5.221

10.  Refining developmental coordination disorder subtyping with multivariate statistical methods.

Authors:  Christophe Lalanne; Bruno Falissard; Bernard Golse; Laurence Vaivre-Douret
Journal:  BMC Med Res Methodol       Date:  2012-07-26       Impact factor: 4.615

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