Literature DB >> 21647610

Backbone and side-chain ¹H, ¹⁵N, and ¹³C resonance assignments of Norwalk virus protease.

Daisuke Takahashi1, Yunjeong Kim, Kyeong-Ok Chang, Asokan Anbanandam, Om Prakash.   

Abstract

Norovirus protease cleaves the virus-encoded polyprotein into six mature nonstructural proteins, presenting itself as an essential enzyme for the viral replication as well as an attractive target for the antiviral drug development. A deeper understanding of the structural mechanism of the protease-substrates/inhibitors interactions by means of solution NMR methods would facilitate a rational design of the virus protease inhibitor. We here report the backbone and side-chain resonance assignment of the protease from Norwalk virus, which is the prototype strain of norovirus. The assignment data has been deposited in the BMRB database under the accession number 17523.

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Year:  2011        PMID: 21647610      PMCID: PMC4479497          DOI: 10.1007/s12104-011-9316-3

Source DB:  PubMed          Journal:  Biomol NMR Assign        ISSN: 1874-270X            Impact factor:   0.746


  9 in total

1.  Processing of Norwalk virus nonstructural proteins by a 3C-like cysteine proteinase.

Authors:  Susan J Blakeney; Adriana Cahill; Patricia A Reilly
Journal:  Virology       Date:  2003-04-10       Impact factor: 3.616

2.  Cleavage map and proteolytic processing of the murine norovirus nonstructural polyprotein in infected cells.

Authors:  Stanislav V Sosnovtsev; Gaël Belliot; Kyeong-Ok Chang; Victor G Prikhodko; Larissa B Thackray; Christiane E Wobus; Stephanie M Karst; Herbert W Virgin; Kim Y Green
Journal:  J Virol       Date:  2006-08       Impact factor: 5.103

3.  X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution.

Authors:  Corinne E Zeitler; Mary K Estes; B V Venkataram Prasad
Journal:  J Virol       Date:  2006-05       Impact factor: 5.103

4.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

5.  A norovirus protease structure provides insights into active and substrate binding site integrity.

Authors:  Kentaro Nakamura; Yuichi Someya; Takashi Kumasaka; Go Ueno; Masaki Yamamoto; Takao Sato; Naokazu Takeda; Tatsuo Miyamura; Nobuo Tanaka
Journal:  J Virol       Date:  2005-11       Impact factor: 5.103

6.  Identification of active-site amino acid residues in the Chiba virus 3C-like protease.

Authors:  Yuichi Someya; Naokazu Takeda; Tatsuo Miyamura
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

7.  Sequence and genome organization of a human small round-structured (Norwalk-like) virus.

Authors:  P R Lambden; E O Caul; C R Ashley; I N Clarke
Journal:  Science       Date:  1993-01-22       Impact factor: 47.728

8.  Substrate specificity of the Norwalk virus 3C-like proteinase.

Authors:  Michele E Hardy; Tammera J Crone; Jessica E Brower; Khalil Ettayebi
Journal:  Virus Res       Date:  2002-10       Impact factor: 3.303

9.  TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts.

Authors:  Yang Shen; Frank Delaglio; Gabriel Cornilescu; Ad Bax
Journal:  J Biomol NMR       Date:  2009-06-23       Impact factor: 2.835

  9 in total
  7 in total

1.  Structural and dynamics characterization of norovirus protease.

Authors:  Daisuke Takahashi; Yasuaki Hiromasa; Yunjeong Kim; Asokan Anbanandam; Xiaolan Yao; Kyeong-Ok Chang; Om Prakash
Journal:  Protein Sci       Date:  2013-01-27       Impact factor: 6.725

Review 2.  Current tools for norovirus drug discovery.

Authors:  Sahani Weerasekara; Allan M Prior; Duy H Hua
Journal:  Expert Opin Drug Discov       Date:  2016-05-02       Impact factor: 6.098

3.  Structural and inhibitor studies of norovirus 3C-like proteases.

Authors:  Daisuke Takahashi; Yunjeong Kim; Scott Lovell; Om Prakash; William C Groutas; Kyeong-Ok Chang
Journal:  Virus Res       Date:  2013-09-17       Impact factor: 3.303

4.  Broad-spectrum antivirals against 3C or 3C-like proteases of picornaviruses, noroviruses, and coronaviruses.

Authors:  Yunjeong Kim; Scott Lovell; Kok-Chuan Tiew; Sivakoteswara Rao Mandadapu; Kevin R Alliston; Kevin P Battaile; William C Groutas; Kyeong-Ok Chang
Journal:  J Virol       Date:  2012-08-22       Impact factor: 5.103

5.  Characterization and inhibition of norovirus proteases of genogroups I and II using a fluorescence resonance energy transfer assay.

Authors:  Kyeong-Ok Chang; Daisuke Takahashi; Om Prakash; Yunjeong Kim
Journal:  Virology       Date:  2011-12-24       Impact factor: 3.616

6.  Potent inhibition of enterovirus D68 and human rhinoviruses by dipeptidyl aldehydes and α-ketoamides.

Authors:  Yunjeong Kim; Anushka C Galasiti Kankanamalage; Vishnu C Damalanka; Pathum M Weerawarna; William C Groutas; Kyeong-Ok Chang
Journal:  Antiviral Res       Date:  2015-11-30       Impact factor: 5.970

7.  Potent inhibition of feline coronaviruses with peptidyl compounds targeting coronavirus 3C-like protease.

Authors:  Yunjeong Kim; Sivakoteswara Rao Mandadapu; William C Groutas; Kyeong-Ok Chang
Journal:  Antiviral Res       Date:  2012-11-28       Impact factor: 5.970

  7 in total

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