Literature DB >> 21646414

Automated measurement of zebrafish larval movement.

Clinton L Cario1, Thomas C Farrell, Chiara Milanese, Edward A Burton.   

Abstract

The zebrafish is a powerful vertebrate model that is readily amenable to genetic, pharmacological and environmental manipulations to elucidate the molecular and cellular basis of movement and behaviour. We report software enabling automated analysis of zebrafish movement from video recordings captured with cameras ranging from a basic camcorder to more specialized equipment. The software, which is provided as open-source MATLAB functions, can be freely modified and distributed, and is compatible with multiwell plates under a wide range of experimental conditions. Automated measurement of zebrafish movement using this technique will be useful for multiple applications in neuroscience, pharmacology and neuropsychiatry.

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Year:  2011        PMID: 21646414      PMCID: PMC3171879          DOI: 10.1113/jphysiol.2011.207308

Source DB:  PubMed          Journal:  J Physiol        ISSN: 0022-3751            Impact factor:   5.182


  10 in total

Review 1.  Genetic zebrafish models of neurodegenerative diseases.

Authors:  Oliver Bandmann; Edward A Burton
Journal:  Neurobiol Dis       Date:  2010-05-20       Impact factor: 5.996

2.  Behavioral screening assays in zebrafish.

Authors:  Michael B Orger; Ethan Gahtan; Akira Muto; Patrick Page-McCaw; Matthew C Smear; Herwig Baier
Journal:  Methods Cell Biol       Date:  2004       Impact factor: 1.441

3.  Sensorimotor gating in larval zebrafish.

Authors:  Harold A Burgess; Michael Granato
Journal:  J Neurosci       Date:  2007-05-02       Impact factor: 6.167

4.  Olfactory neural circuitry for attraction to amino acids revealed by transposon-mediated gene trap approach in zebrafish.

Authors:  Tetsuya Koide; Nobuhiko Miyasaka; Kozo Morimoto; Kazuhide Asakawa; Akihiro Urasaki; Koichi Kawakami; Yoshihiro Yoshihara
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-03       Impact factor: 11.205

5.  Pentylenetetrazole induced changes in zebrafish behavior, neural activity and c-fos expression.

Authors:  S C Baraban; M R Taylor; P A Castro; H Baier
Journal:  Neuroscience       Date:  2005       Impact factor: 3.590

Review 6.  Behavioral genetics in larval zebrafish: learning from the young.

Authors:  Marc Wolman; Michael Granato
Journal:  Dev Neurobiol       Date:  2012-03       Impact factor: 3.964

7.  GBR12909 possesses anticonvulsant activity in zebrafish and rodent models of generalized epilepsy but cardiac ion channel effects limit its clinical utility.

Authors:  Paul Goldsmith; Zoe Golder; Julia Hunt; Stephane Berghmans; Derek Jones; James P Stables; Lauren Murphree; Diane Howden; Paul E Newton; Frances M Richards
Journal:  Pharmacology       Date:  2007-04-27       Impact factor: 2.547

8.  Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation.

Authors:  Jason Rihel; David A Prober; Anthony Arvanites; Kelvin Lam; Steven Zimmerman; Sumin Jang; Stephen J Haggarty; David Kokel; Lee L Rubin; Randall T Peterson; Alexander F Schier
Journal:  Science       Date:  2010-01-15       Impact factor: 47.728

9.  Modulation of locomotor activity in larval zebrafish during light adaptation.

Authors:  Harold A Burgess; Michael Granato
Journal:  J Exp Biol       Date:  2007-07       Impact factor: 3.312

10.  Visual prey capture in larval zebrafish is controlled by identified reticulospinal neurons downstream of the tectum.

Authors:  Ethan Gahtan; Paul Tanger; Herwig Baier
Journal:  J Neurosci       Date:  2005-10-05       Impact factor: 6.709

  10 in total
  18 in total

1.  Spectral properties of the zebrafish visual motor response.

Authors:  Charles E Burton; Yangzhong Zhou; Qing Bai; Edward A Burton
Journal:  Neurosci Lett       Date:  2017-03-04       Impact factor: 3.046

Review 2.  Automated processing of zebrafish imaging data: a survey.

Authors:  Ralf Mikut; Thomas Dickmeis; Wolfgang Driever; Pierre Geurts; Fred A Hamprecht; Bernhard X Kausler; María J Ledesma-Carbayo; Raphaël Marée; Karol Mikula; Periklis Pantazis; Olaf Ronneberger; Andres Santos; Rainer Stotzka; Uwe Strähle; Nadine Peyriéras
Journal:  Zebrafish       Date:  2013-06-12       Impact factor: 1.985

Review 3.  Zebrafish in Toxicology and Environmental Health.

Authors:  Kathryn Bambino; Jaime Chu
Journal:  Curr Top Dev Biol       Date:  2016-12-21       Impact factor: 4.897

4.  Quantification of larval zebrafish motor function in multiwell plates using open-source MATLAB applications.

Authors:  Yangzhong Zhou; Richard T Cattley; Clinton L Cario; Qing Bai; Edward A Burton
Journal:  Nat Protoc       Date:  2014-06-05       Impact factor: 13.491

5.  Bifenthrin causes transcriptomic alterations in mTOR and ryanodine receptor-dependent signaling and delayed hyperactivity in developing zebrafish (Danio rerio).

Authors:  Daniel F Frank; Galen W Miller; Danielle J Harvey; Susanne M Brander; Juergen Geist; Richard E Connon; Pamela J Lein
Journal:  Aquat Toxicol       Date:  2018-04-18       Impact factor: 4.964

6.  Live imaging of mitochondrial dynamics in CNS dopaminergic neurons in vivo demonstrates early reversal of mitochondrial transport following MPP(+) exposure.

Authors:  April A Dukes; Qing Bai; Victor S Van Laar; Yangzhong Zhou; Vladimir Ilin; Christopher N David; Zeynep S Agim; Joshua L Bonkowsky; Jason R Cannon; Simon C Watkins; Claudette M St Croix; Edward A Burton; Sarah B Berman
Journal:  Neurobiol Dis       Date:  2016-07-22       Impact factor: 5.996

7.  Tracking zebrafish larvae in group--status and perspectives.

Authors:  Pierre R Martineau; Philippe Mourrain
Journal:  Methods       Date:  2013-05-24       Impact factor: 3.608

8.  An open-source method to analyze optokinetic reflex responses in larval zebrafish.

Authors:  Seth D Scheetz; Enhua Shao; Yangzhong Zhou; Clinton L Cario; Qing Bai; Edward A Burton
Journal:  J Neurosci Methods       Date:  2017-10-16       Impact factor: 2.390

9.  The zebrafish homologue of the human DYT1 dystonia gene is widely expressed in CNS neurons but non-essential for early motor system development.

Authors:  Jonathan J Sager; Gonzalo E Torres; Edward A Burton
Journal:  PLoS One       Date:  2012-09-28       Impact factor: 3.240

10.  Quantification of locomotor activity in larval zebrafish: considerations for the design of high-throughput behavioral studies.

Authors:  Justin J Ingebretson; Mark A Masino
Journal:  Front Neural Circuits       Date:  2013-06-10       Impact factor: 3.492

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