Literature DB >> 21641328

Tracking single particles and elongated filaments with nanometer precision.

Felix Ruhnow1, David Zwicker, Stefan Diez.   

Abstract

Recent developments in image processing have greatly advanced our understanding of biomolecular processes in vitro and in vivo. In particular, using Gaussian models to fit the intensity profiles of nanometer-sized objects have enabled their two-dimensional localization with a precision in the one-nanometer range. Here, we present an algorithm to precisely localize curved filaments whose structures are characterized by subresolution diameters and micrometer lengths. Using surface-immobilized microtubules, fluorescently labeled with rhodamine, we demonstrate positional precisions of ∼2 nm when determining the filament centerline and ∼9 nm when localizing the filament tips. Combined with state-of-the-art single particle tracking we apply the algorithm 1), to motor-proteins stepping on immobilized microtubules, 2), to depolymerizing microtubules, and 3), to microtubules gliding over motor-coated surfaces.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21641328      PMCID: PMC3117161          DOI: 10.1016/j.bpj.2011.04.023

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  28 in total

1.  KIF1D is a fast non-processive kinesin that demonstrates novel K-loop-dependent mechanochemistry.

Authors:  K R Rogers; S Weiss; I Crevel; P J Brophy; M Geeves; R Cross
Journal:  EMBO J       Date:  2001-09-17       Impact factor: 11.598

2.  Quantitative comparison of algorithms for tracking single fluorescent particles.

Authors:  M K Cheezum; W F Walker; W H Guilford
Journal:  Biophys J       Date:  2001-10       Impact factor: 4.033

3.  Microscopic analysis of polymerization dynamics with individual actin filaments.

Authors:  Ikuko Fujiwara; Shin Takahashi; Hisashi Tadakuma; Takashi Funatsu; Shin'ichi Ishiwata
Journal:  Nat Cell Biol       Date:  2002-09       Impact factor: 28.824

Review 4.  Studying kinesin motors by optical 3D-nanometry in gliding motility assays.

Authors:  Bert Nitzsche; Volker Bormuth; Corina Bräuer; Jonathon Howard; Leonid Ionov; Jacob Kerssemakers; Till Korten; Cecile Leduc; Felix Ruhnow; Stefan Diez
Journal:  Methods Cell Biol       Date:  2010       Impact factor: 1.441

5.  The depolymerizing kinesin MCAK uses lattice diffusion to rapidly target microtubule ends.

Authors:  Jonne Helenius; Gary Brouhard; Yannis Kalaidzidis; Stefan Diez; Jonathon Howard
Journal:  Nature       Date:  2006-05-04       Impact factor: 49.962

6.  Speckled microtubules improve tracking in motor-protein gliding assays.

Authors:  Ernest N Chisena; R Andrew Wall; Jed C Macosko; George Holzwarth
Journal:  Phys Biol       Date:  2007-02-08       Impact factor: 2.583

Review 7.  Three-dimensional particle tracking via bifocal imaging.

Authors:  Erdal Toprak; Hamza Balci; Benjamin H Blehm; Paul R Selvin
Journal:  Nano Lett       Date:  2007-06-21       Impact factor: 11.189

8.  Quantum-dot-assisted characterization of microtubule rotations during cargo transport.

Authors:  Bert Nitzsche; Felix Ruhnow; Stefan Diez
Journal:  Nat Nanotechnol       Date:  2008-08-10       Impact factor: 39.213

9.  Kin I kinesins are microtubule-destabilizing enzymes.

Authors:  A Desai; S Verma; T J Mitchison; C E Walczak
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

10.  Processivity of the motor protein kinesin requires two heads.

Authors:  W O Hancock; J Howard
Journal:  J Cell Biol       Date:  1998-03-23       Impact factor: 10.539

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  108 in total

1.  Molecular crowding creates traffic jams of kinesin motors on microtubules.

Authors:  Cécile Leduc; Kathrin Padberg-Gehle; Vladimír Varga; Dirk Helbing; Stefan Diez; Jonathon Howard
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Kinetics of nucleotide-dependent structural transitions in the kinesin-1 hydrolysis cycle.

Authors:  Keith J Mickolajczyk; Nathan C Deffenbaugh; Jaime Ortega Arroyo; Joanna Andrecka; Philipp Kukura; William O Hancock
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-16       Impact factor: 11.205

3.  The axonal transport motor kinesin-2 navigates microtubule obstacles via protofilament switching.

Authors:  Gregory J Hoeprich; Keith J Mickolajczyk; Shane R Nelson; William O Hancock; Christopher L Berger
Journal:  Traffic       Date:  2017-04-05       Impact factor: 6.215

4.  Kinesin-1 motors can circumvent permanent roadblocks by side-shifting to neighboring protofilaments.

Authors:  René Schneider; Till Korten; Wilhelm J Walter; Stefan Diez
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

5.  Insights into Kinesin-1 Stepping from Simulations and Tracking of Gold Nanoparticle-Labeled Motors.

Authors:  Keith J Mickolajczyk; Annan S I Cook; Janak P Jevtha; John Fricks; William O Hancock
Journal:  Biophys J       Date:  2019-06-20       Impact factor: 4.033

6.  The Orphan Kinesin PAKRP2 Achieves Processive Motility via a Noncanonical Stepping Mechanism.

Authors:  Allison M Gicking; Pan Wang; Chun Liu; Keith J Mickolajczyk; Lijun Guo; William O Hancock; Weihong Qiu
Journal:  Biophys J       Date:  2019-02-28       Impact factor: 4.033

7.  A Brownian Ratchet Model Explains the Biased Sidestepping of Single-Headed Kinesin-3 KIF1A.

Authors:  Aniruddha Mitra; Marc Suñé; Stefan Diez; José M Sancho; David Oriola; Jaume Casademunt
Journal:  Biophys J       Date:  2019-05-18       Impact factor: 4.033

Review 8.  Kinesin-1 motors can increase the lifetime of taxol-stabilized microtubules.

Authors:  Cordula Reuther; Alejandra Laguillo Diego; Stefan Diez
Journal:  Nat Nanotechnol       Date:  2016-11-08       Impact factor: 39.213

9.  Kinesin Processivity Is Determined by a Kinetic Race from a Vulnerable One-Head-Bound State.

Authors:  Keith J Mickolajczyk; William O Hancock
Journal:  Biophys J       Date:  2017-06-20       Impact factor: 4.033

10.  The Tail of Kinesin-14a in Giardia Is a Dual Regulator of Motility.

Authors:  Kuo-Fu Tseng; Keith J Mickolajczyk; Guangxi Feng; Qingzhou Feng; Ethiene S Kwok; Jesse Howe; Elisar J Barbar; Scott C Dawson; William O Hancock; Weihong Qiu
Journal:  Curr Biol       Date:  2020-07-30       Impact factor: 10.834

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