Literature DB >> 21638609

SigrafW: An easy-to-use program for fitting enzyme kinetic data.

Francisco Assis Leone1, José Augusto Baranauskas, Rosa Prazeres Melo Furriel, Ivana Aparecida Borin.   

Abstract

SigrafW is Windows-compatible software developed using the Microsoft® Visual Basic Studio program that uses the simplified Hill equation for fitting kinetic data from allosteric and Michaelian enzymes. SigrafW uses a modified Fibonacci search to calculate maximal velocity (V), the Hill coefficient (n), and the enzyme-substrate apparent dissociation constant (K). The estimation of V, K, and the sum of the squares of residuals is performed using a Wilkinson nonlinear regression at any Hill coefficient (n). In contrast to many currently available kinetic analysis programs, SigrafW shows several advantages for the determination of kinetic parameters of both hyperbolic and nonhyperbolic saturation curves. No initial estimates of the kinetic parameters are required, a measure of the goodness-of-the-fit for each calculation performed is provided, the nonlinear regression used for calculations eliminates the statistical bias inherent in linear transformations, and the software can be used for enzyme kinetic simulations either for educational or research purposes. Persons interested in receiving a free copy of the software should contact Dr. F. A. Leone.
Copyright © 2005 International Union of Biochemistry and Molecular Biology, Inc.

Entities:  

Year:  2005        PMID: 21638609     DOI: 10.1002/bmb.2005.49403306399

Source DB:  PubMed          Journal:  Biochem Mol Biol Educ        ISSN: 1470-8175            Impact factor:   1.160


  25 in total

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Authors:  Lucas F Ribeiro; Gilvan P Furtado; Marcos R Lourenzoni; Antonio J Costa-Filho; Camila R Santos; Simone C Peixoto Nogueira; Jorge A Betini; Maria de Lourdes T M Polizeli; Mario T Murakami; Richard J Ward
Journal:  J Biol Chem       Date:  2011-10-17       Impact factor: 5.157

2.  Polyamines regulate phosphorylation-dephosphorylation kinetics in a crustacean gill (Na+, K+)-ATPase.

Authors:  Malson Neilson Lucena; Daniela Pereira Garçon; Carlos Frederico Leite Fontes; John Campbell McNamara; Francisco Assis Leone
Journal:  Mol Cell Biochem       Date:  2017-02-11       Impact factor: 3.396

3.  A Kinetic Characterization of the Gill (Na+, K+)-ATPase from the Semi-terrestrial Mangrove Crab Cardisoma guanhumi Latreille, 1825 (Decapoda, Brachyura).

Authors:  Daniel L Farias; Malson N Lucena; Daniela P Garçon; Fernando L Mantelatto; John C McNamara; Francisco A Leone
Journal:  J Membr Biol       Date:  2017-08-24       Impact factor: 1.843

4.  A kinetic characterization of (Na+, K+)-ATPase activity in the gills of the pelagic seabob shrimp Xiphopenaeus kroyeri (Decapoda, Penaeidae).

Authors:  Francisco Assis Leone; Malson Neilson Lucena; Luciana Augusto Rezende; Daniela Pereira Garçon; Marcelo Rodrigues Pinto; Fernando Luis Mantelatto; John Campbell McNamara
Journal:  J Membr Biol       Date:  2014-12-23       Impact factor: 1.843

5.  Purification and biochemical properties of a glucose-stimulated beta-D-glucosidase produced by Humicola grisea var. thermoidea grown on sugarcane bagasse.

Authors:  Cesar Vanderlei Nascimento; Flávio Henrique Moreira Souza; Douglas Chodi Masui; Francisco Assis Leone; Rosane Marina Peralta; João Atílio Jorge; Rosa Prazeres Melo Furriel
Journal:  J Microbiol       Date:  2010-03-11       Impact factor: 3.422

6.  Na⁺,K⁺-ATPase activity in the posterior gills of the blue crab, Callinectes ornatus (Decapoda, Brachyura): modulation of ATP hydrolysis by the biogenic amines spermidine and spermine.

Authors:  Daniela P Garçon; Malson N Lucena; Juliana L França; John C McNamara; Carlos F L Fontes; Francisco A Leone
Journal:  J Membr Biol       Date:  2011-10-05       Impact factor: 1.843

7.  Proteoliposomes with the ability to transport Ca(2+) into the vesicles and hydrolyze phosphosubstrates on their surface.

Authors:  Maytê Bolean; Ana Maria S Simão; Tina Kiffer-Moreira; Marc F Hoylaerts; José Luis Millán; Rosangela Itri; Pietro Ciancaglini
Journal:  Arch Biochem Biophys       Date:  2015-08-29       Impact factor: 4.013

8.  Purification and biochemical characterization of thermostable alkaline phosphatases produced by Rhizopus microsporus var. rhizopodiformis.

Authors:  A Barbosa Junior; L H S GuimarAes; H F Terenzi; J A Jorge; F A Leone; M L T M Polizeli
Journal:  Folia Microbiol (Praha)       Date:  2009-04-18       Impact factor: 2.099

9.  Removal from the membrane affects the interaction of rat osseous plate ecto-nucleosidetriphosphate diphosphohydrolase-1 with substrates and ions.

Authors:  Daniela P Garçon; Douglas C Masui; Rosa P M Furriel; Francisco A Leone
Journal:  J Membr Biol       Date:  2008-10-08       Impact factor: 1.843

10.  Proteoliposomes harboring alkaline phosphatase and nucleotide pyrophosphatase as matrix vesicle biomimetics.

Authors:  Ana Maria S Simão; Manisha C Yadav; Sonoko Narisawa; Mayte Bolean; Joao Martins Pizauro; Marc F Hoylaerts; Pietro Ciancaglini; José Luis Millán
Journal:  J Biol Chem       Date:  2010-01-04       Impact factor: 5.157

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