| Literature DB >> 21637433 |
Aline Grasielle Costa de Melo1, Eduardo Sousa Varela, Colin Robert Beasley, Horacio Schneider, Iracilda Sampaio, Patrick Michael Gaffney, Kimberly S Reece, Claudia Helena Tagliaro.
Abstract
Oysters (Ostreidae) manifest a high degree of phenotypic plasticity, whereby morphology is of limited value for species identification and taxonomy. By using molecular data, the aim was to genetically characterize the species of Crassostrea occurring along the Brazilian coast, and phylogenetically relate these to other Crassostrea from different parts of the world. Sequencing of the partial cytochrome oxidase c subunit I gene (COI), revealed a total of three species of Crassostrea at 16 locations along the Brazilian coast. C. gasar was found from Curuçá (Pará state) to Santos (São Paulo state), and C. rhizophorae from Fortim (Ceará state) to Florianópolis (Santa Catarina state), although small individuals of the latter species were also found at Ajuruteua beach (municipality of Bragança, Pará state). An unidentified Crassostrea species was found only on Canela Island, Bragança. Crassostrea gasar and C. rhizophorae grouped with C. virginica, thereby forming a monophyletic Atlantic group, whereas Crassostrea sp. from Canela Island was shown to be more similar to Indo-Pacific oysters, and either arrived in the Atlantic Ocean before the convergence of the Isthmus of Panama or was accidentally brought to Brazil by ship.Entities:
Keywords: COI gene; Ostreidae; biogeography; genetic identification; oysters
Year: 2010 PMID: 21637433 PMCID: PMC3036104 DOI: 10.1590/S1415-47572010000300030
Source DB: PubMed Journal: Genet Mol Biol ISSN: 1415-4757 Impact factor: 1.771
Species, sample size (n), number of COI haplotypes (H), sampling location and GenBank accession number of Brazilian oysters used in the present study.
| Species | n | H | Municipality (Locality) | GenBank accession number |
| 25 | 7 | Salinópolis | HM003499, HM003501, HM003504, HM003507, HM003509, HM003512, HM003513 | |
| 32 | 7 | São João de Pirabas | HM003499, HM003502, HM003503, HM003504, HM003505, HM003506, HM003507 | |
| 30 | 5 | Bragança (Caratateua) | HM003499, HM003504, HM003508, HM003509, HM003510 | |
| 30 | 3 | Augusto Corrêa (Nova Olinda) | HM003499, HM003500, HM003501 | |
| 11 | 4 | Humberto Campos | HM003499, HM003517, HM003518, HM003519 | |
| 15 | 4 | Tutóia | HM003499, HM003507, HM003515, HM003516 | |
| 20 | 7 | Parnaíba | HM003499, HM003516, HM003520, HM003521, HM003522, HM003523, HM003524 | |
| 30 | 4 | Cachoeira | HM003499, HM003504, HM003507, HM003511 | |
| 22 | 2 | Santos | HM003504, HM003514 | |
| 9 | 6 | Fortim | HM003475, HM003476, HM003484, HM003490, HM003491, HM003492 | |
| 17 | 8 | Camurupim | HM003475, HM003476, HM003493, HM003494, HM003495, HM003496, HM003497, HM003498 | |
| 16 | 8 | Maceió | HM003475, HM003476, HM003484, HM003485, HM003486, HM003487, HM003488, HM003489 | |
| 14 | 6 | Vitória | HM003475, HM003476, HM003480, HM003481, HM003482, HM003483 | |
| 11 | 5 | Florianópolis | HM003475, HM003476, HM003477, HM003478, HM003479 | |
| 7 | 2 | Bragança (Canela Island) | HM003525, HM003526 | |
| 3 | 1 | Bragança (Furo do Café) | HM003525 |
Figure 1Map of Brazil indicating the sampling locations for mangrove oysters.
GenBank accession numbers of COI sequences of species of Ostreinae and Lophinae used in the analyses.
| Subfamily | Species | GenBank accession numbers |
| Ostreinae | HM003492 1 | |
| HM003499 1 | ||
| HM003525 | ||
| HM003526 | ||
| AF152567 2 | ||
| AJ553907 2 | ||
| AJ553908 2 | ||
| AY397685 2 | ||
| AY397686 2 | ||
| AY455664 2 | ||
| AF152569 3 | ||
| AF300617 3 | ||
| AY160752 3 | ||
| AY160753 3 | ||
| AY160754 3 | ||
| AY038077 3 | ||
| AY160755 3 | ||
| AB033687 3 | ||
| AF152565 3 | ||
| AF280608 3 | ||
| AJ553909 3 | ||
| AJ553910 3 | ||
| AJ553911 3 | ||
| AY038078 3 | ||
| AF300616 3 | ||
| AF152568 3 | ||
| AJ553912 4 | ||
| AY160746 4 | ||
| AY160747 4 | ||
| AY160748 4 | ||
| AY160749 4 | ||
| AY160750 4 | ||
| AY160751 4 | ||
| AY249023 4 | ||
| AY249024 4 | ||
| AY249025 4 | ||
| AY249027 4 | ||
| AY249031 4 | ||
| AY249032 4 | ||
| AY249033 4 | ||
| AF152566 1 | ||
| AY376633 1 | ||
| AY376634 1 | ||
| AY376635 1 | ||
| EU007489 3 | ||
| EU007491 3 | ||
| EU007488 3 | ||
| EU007487 3 | ||
| EU007486 3 | ||
| EU007462 3 | ||
| AF540598 | ||
| AY376630 | ||
| AY376632 | ||
| AF112286 | ||
| AF112289 | ||
| AF120651 | ||
| AY376611 | ||
| AY376618 | ||
| AY376626 | ||
| AY038076 | ||
| Lophinae | AB076908 | |
| AB084109 |
1Atlantic species; 2Indo-Pacific species introduced into the Atlantic; 3Indo-Pacific species; 4Unidentified species. *Used in Analyses I and II.
Figure 2Neighbor-joining (NJ) tree for Ostreinae based on COI. Dendostrea frons and Lophacristagalli were used as outgroups. Numbers above or below the branches are the bootstrap support values for NJ, Maximum Parsimony and Maximum Likelihood analyses, respectively.
Figure 3Neighbor-joining (NJ) tree for ten Crassostrea species and one Saccostrea cucullata based on COI. Ostrea chilensis and Ostrea edulis were used as outgroups. Numbers above the branches are the bootstrap support values for NJ, Maximum Parsimony and Maximum Likelihood analyses, respectively.