Literature DB >> 21632291

Multiscale modeling of calcium dynamics in ventricular myocytes with realistic transverse tubules.

Zeyun Yu1, Guangming Yao, Masahiko Hoshijima, Anushka Michailova, Michael Holst.   

Abstract

Spatial-temporal Ca(2+) dynamics due to Ca(2+) release, buffering, and reuptaking plays a central role in studying excitation-contraction (E-C) coupling in both normal and diseased cardiac myocytes. In this paper, we employ two numerical methods, namely, the meshless method and the finite element method, to model such Ca(2+) behaviors by solving a nonlinear system of reaction-diffusion partial differential equations at two scales. In particular, a subcellular model containing several realistic transverse tubules (or t-tubules) is investigated and assumed to reside at different locations relative to the cell membrane. To this end, the Ca(2+) concentration calculated from the whole-cell modeling is adopted as part of the boundary constraint in the subcellular model. The preliminary simulations show that Ca(2+) concentration changes in ventricular myocytes are mainly influenced by calcium release from t-tubules.

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Year:  2011        PMID: 21632291      PMCID: PMC3179564          DOI: 10.1109/TBME.2011.2158316

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  17 in total

Review 1.  Cardiac excitation-contraction coupling.

Authors:  Donald M Bers
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

Review 2.  T-tubule function in mammalian cardiac myocytes.

Authors:  Fabien Brette; Clive Orchard
Journal:  Circ Res       Date:  2003-06-13       Impact factor: 17.367

3.  Facilitation through buffer saturation: constraints on endogenous buffering properties.

Authors:  Victor Matveev; Robert S Zucker; Arthur Sherman
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

4.  Interplay of ryanodine receptor distribution and calcium dynamics.

Authors:  Leighton T Izu; Shawn A Means; John N Shadid; Ye Chen-Izu; C William Balke
Journal:  Biophys J       Date:  2006-04-07       Impact factor: 4.033

5.  Comparison of subsarcolemmal and bulk calcium concentration during spontaneous calcium release in rat ventricular myocytes.

Authors:  A W Trafford; M E Díaz; S C O'Neill; D A Eisner
Journal:  J Physiol       Date:  1995-11-01       Impact factor: 5.182

6.  Surface:volume relationship in cardiac myocytes studied with confocal microscopy and membrane capacitance measurements: species-dependence and developmental effects.

Authors:  H Satoh; L M Delbridge; L A Blatter; D M Bers
Journal:  Biophys J       Date:  1996-03       Impact factor: 4.033

7.  A 3D Monte Carlo analysis of the role of dyadic space geometry in spark generation.

Authors:  Xiaoying Koh; Bhuvan Srinivasan; Hwee Seong Ching; Andre Levchenko
Journal:  Biophys J       Date:  2005-12-30       Impact factor: 4.033

8.  The transverse-axial tubular system (TATS) of mouse myocardium: its morphology in the developing and adult animal.

Authors:  M S Forbes; L A Hawkey; N Sperelakis
Journal:  Am J Anat       Date:  1984-06

9.  A simplified local control model of calcium-induced calcium release in cardiac ventricular myocytes.

Authors:  R Hinch; J L Greenstein; A J Tanskanen; L Xu; R L Winslow
Journal:  Biophys J       Date:  2004-10-01       Impact factor: 4.033

10.  Numerical analysis of Ca2+ signaling in rat ventricular myocytes with realistic transverse-axial tubular geometry and inhibited sarcoplasmic reticulum.

Authors:  Yuhui Cheng; Zeyun Yu; Masahiko Hoshijima; Michael J Holst; Andrew D McCulloch; J Andrew McCammon; Anushka P Michailova
Journal:  PLoS Comput Biol       Date:  2010-10-28       Impact factor: 4.475

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  3 in total

Review 1.  Computational modeling of subcellular transport and signaling.

Authors:  Johan Hake; Peter M Kekenes-Huskey; Andrew D McCulloch
Journal:  Curr Opin Struct Biol       Date:  2014-02-07       Impact factor: 6.809

2.  Modeling effects of L-type ca(2+) current and na(+)-ca(2+) exchanger on ca(2+) trigger flux in rabbit myocytes with realistic T-tubule geometries.

Authors:  Peter M Kekenes-Huskey; Yuhui Cheng; Johan E Hake; Frank B Sachse; John H Bridge; Michael J Holst; J Andrew McCammon; Andrew D McCulloch; Anushka P Michailova
Journal:  Front Physiol       Date:  2012-09-10       Impact factor: 4.566

3.  A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructions.

Authors:  Michael A Colman; Christian Pinali; Andrew W Trafford; Henggui Zhang; Ashraf Kitmitto
Journal:  PLoS Comput Biol       Date:  2017-08-31       Impact factor: 4.475

  3 in total

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