Literature DB >> 21632045

Mathematical modeling and sensitivity analysis of the integrated TNFα-mediated apoptotic pathway for identifying key regulators.

Geoffrey Koh1, Dong-Yup Lee.   

Abstract

TNFα-mediated apoptosis is one of the complex and tightly regulated cellular processes as it involves the activation of both pro- and anti-apoptotic signaling pathways. Thus, it is important to elucidate the molecular players of this process and their dynamics in order to gain an in-depth understanding of the mechanisms underlying apoptosis. To this end, we proposed an integrated model of TNFα-mediated apoptosis pathway in Type I cells, formulated based on the principles of mass action kinetics. The model includes major apoptotic modules-the extrinsic and intrinsic pathways, the NFκB survival signaling and various regulatory mechanisms. We performed simulations and sensitivity analyses to study the role of NFκB pathway in regulating apoptosis, and identified IAP as one of the more potent regulators of apoptosis.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21632045     DOI: 10.1016/j.compbiomed.2011.04.017

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  6 in total

Review 1.  Lessons from mathematically modeling the NF-κB pathway.

Authors:  Soumen Basak; Marcelo Behar; Alexander Hoffmann
Journal:  Immunol Rev       Date:  2012-03       Impact factor: 12.988

2.  Regulation of signal transduction by spatial parameters: a case in NF-κB oscillation.

Authors:  Kazuhisa Ichikawa; Daisuke Ohshima; Hiroshi Sagara
Journal:  IET Syst Biol       Date:  2015-04       Impact factor: 1.615

Review 3.  Mathematical and Computational Modeling in Complex Biological Systems.

Authors:  Zhiwei Ji; Ke Yan; Wenyang Li; Haigen Hu; Xiaoliang Zhu
Journal:  Biomed Res Int       Date:  2017-03-13       Impact factor: 3.411

Review 4.  NF-κB Signaling in Macrophages: Dynamics, Crosstalk, and Signal Integration.

Authors:  Michael G Dorrington; Iain D C Fraser
Journal:  Front Immunol       Date:  2019-04-09       Impact factor: 7.561

5.  Genome scale modeling in systems biology: algorithms and resources.

Authors:  Ali Najafi; Gholamreza Bidkhori; Joseph H Bozorgmehr; Ina Koch; Ali Masoudi-Nejad
Journal:  Curr Genomics       Date:  2014-04       Impact factor: 2.236

6.  Mathematical modelling of the role of GADD45β in the pathogenesis of multiple myeloma.

Authors:  Yao Zhang; Changqing Zhen; Qing Yang; Bing Ji
Journal:  R Soc Open Sci       Date:  2020-05-13       Impact factor: 2.963

  6 in total

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