Literature DB >> 21628168

The age and biogeography of Citrus and the orange subfamily (Rutaceae: Aurantioideae) in Australasia and New Caledonia.

Bernard E Pfeil1, Michael D Crisp.   

Abstract

The geological history of Australasia, New Caledonia, and Southeast Asia, has been complex, resulting in competing biogeographic hypotheses for taxa found here. Alternative hypotheses-Gondwanan vicariance, rafting terranes, long-distance dispersal-may be distinguished by different predicted divergence times between disjunct sister taxa. Taxa within Rutaceae subfamily Aurantioideae are ideal for testing these hypotheses because of their distributions. Therefore, the ages of Rutaceae and Aurantioideae were estimated using molecular dating. One data set comprised 51 sequences of rbcL and atpB with sampling across rosids and three fossil calibrations: crown Fabales+Fagales+Rosales (>94 Ma), Fabaceae (>51 Ma) and stem Ailanthus, Simaroubaceae (>52 Ma). Another data set comprised 81 Aurantioideae using >8 kb of chloroplast sequence and secondary calibration. Confidence in estimated divergence times was explored by varying the root age, dating method (strict, local, and relaxed clocks), and inclusion of internal calibrations. We conclude that the Rutaceae crown diverged in the Eocene (36.4-56.8 Ma, mean 47.6), whereas the Aurantioideae crown originated in the early Miocene (12.1-28.2 Ma, mean 19.8). This young age suggests that Gondwanan vicariance does not explain the distributions of extant Aurantioideae. Taxa found in New Caledonia may have arrived by separate transoceanic dispersal events.

Entities:  

Year:  2008        PMID: 21628168     DOI: 10.3732/ajb.0800214

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  16 in total

1.  Changing Ecological Opportunities Facilitated the Explosive Diversification of New Caledonian Oxera (Lamiaceae).

Authors:  Laure Barrabé; Sébastien Lavergne; Giliane Karnadi-Abdelkader; Bryan T Drew; Philippe Birnbaum; Gildas Gâteblé
Journal:  Syst Biol       Date:  2019-05-01       Impact factor: 15.683

2.  Genomics of the origin and evolution of Citrus.

Authors:  Guohong Albert Wu; Javier Terol; Victoria Ibanez; Antonio López-García; Estela Pérez-Román; Carles Borredá; Concha Domingo; Francisco R Tadeo; Jose Carbonell-Caballero; Roberto Alonso; Franck Curk; Dongliang Du; Patrick Ollitrault; Mikeal L Roose; Joaquin Dopazo; Frederick G Gmitter; Daniel S Rokhsar; Manuel Talon
Journal:  Nature       Date:  2018-02-07       Impact factor: 49.962

3.  Nucleotide Evolution, Domestication Selection, and Genetic Relationships of Chloroplast Genomes in the Economically Important Crop Genus Gossypium.

Authors:  Tong Zhou; Ning Wang; Yuan Wang; Xian-Liang Zhang; Bao-Guo Li; Wei Li; Jun-Ji Su; Cai-Xiang Wang; Ai Zhang; Xiong-Feng Ma; Zhong-Hu Li
Journal:  Front Plant Sci       Date:  2022-04-15       Impact factor: 6.627

4.  A family of small cyclic amphipathic peptides (SCAmpPs) genes in citrus.

Authors:  William R Belknap; Kent F McCue; Leslie A Harden; William H Vensel; Michael G Bausher; Ed Stover
Journal:  BMC Genomics       Date:  2015-04-16       Impact factor: 3.969

5.  Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication.

Authors:  G Albert Wu; Simon Prochnik; Jerry Jenkins; Jerome Salse; Uffe Hellsten; Florent Murat; Xavier Perrier; Manuel Ruiz; Simone Scalabrin; Javier Terol; Marco Aurélio Takita; Karine Labadie; Julie Poulain; Arnaud Couloux; Kamel Jabbari; Federica Cattonaro; Cristian Del Fabbro; Sara Pinosio; Andrea Zuccolo; Jarrod Chapman; Jane Grimwood; Francisco R Tadeo; Leandro H Estornell; Juan V Muñoz-Sanz; Victoria Ibanez; Amparo Herrero-Ortega; Pablo Aleza; Julián Pérez-Pérez; Daniel Ramón; Dominique Brunel; François Luro; Chunxian Chen; William G Farmerie; Brian Desany; Chinnappa Kodira; Mohammed Mohiuddin; Tim Harkins; Karin Fredrikson; Paul Burns; Alexandre Lomsadze; Mark Borodovsky; Giuseppe Reforgiato; Juliana Freitas-Astúa; Francis Quetier; Luis Navarro; Mikeal Roose; Patrick Wincker; Jeremy Schmutz; Michele Morgante; Marcos Antonio Machado; Manuel Talon; Olivier Jaillon; Patrick Ollitrault; Frederick Gmitter; Daniel Rokhsar
Journal:  Nat Biotechnol       Date:  2014-06-08       Impact factor: 54.908

6.  A Phylogenetic Analysis of 34 Chloroplast Genomes Elucidates the Relationships between Wild and Domestic Species within the Genus Citrus.

Authors:  Jose Carbonell-Caballero; Roberto Alonso; Victoria Ibañez; Javier Terol; Manuel Talon; Joaquin Dopazo
Journal:  Mol Biol Evol       Date:  2015-04-14       Impact factor: 16.240

7.  Towards a molecular taxonomic key of the Aurantioideae subfamily using chloroplastic SNP diagnostic markers of the main clades genotyped by competitive allele-specific PCR.

Authors:  Amel Oueslati; Frederique Ollitrault; Ghada Baraket; Amel Salhi-Hannachi; Luis Navarro; Patrick Ollitrault
Journal:  BMC Genet       Date:  2016-08-18       Impact factor: 2.797

8.  Chilean Pitavia more closely related to Oceania and Old World Rutaceae than to Neotropical groups: evidence from two cpDNA non-coding regions, with a new subfamilial classification of the family.

Authors:  Milton Groppo; Jacquelyn A Kallunki; José Rubens Pirani; Alexandre Antonelli
Journal:  PhytoKeys       Date:  2012-12-18       Impact factor: 1.635

9.  A six nuclear gene phylogeny of Citrus (Rutaceae) taking into account hybridization and lineage sorting.

Authors:  Chandrika Ramadugu; Bernard E Pfeil; Manjunath L Keremane; Richard F Lee; Ivan J Maureira-Butler; Mikeal L Roose
Journal:  PLoS One       Date:  2013-07-16       Impact factor: 3.240

10.  Major clades of Australasian Rutoideae (Rutaceae) based on rbcL and atpB sequences.

Authors:  Michael J Bayly; Gareth D Holmes; Paul I Forster; David J Cantrill; Pauline Y Ladiges
Journal:  PLoS One       Date:  2013-08-13       Impact factor: 3.240

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