Literature DB >> 21626631

Protein-DNA recognition triggered by a DNA conformational switch.

Benjamin Bouvier1, Krystyna Zakrzewska, Richard Lavery.   

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Year:  2011        PMID： 21626631     DOI： 10.1002/anie.201101417

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  15 in total

1.  Dynamics and recognition within a protein-DNA complex: a molecular dynamics study of the SKN-1/DNA interaction.

Authors:  Loïc Etheve; Juliette Martin; Richard Lavery
Journal:  Nucleic Acids Res       Date:  2015-12-31       Impact factor: 16.971

2.  DNA Shape versus Sequence Variations in the Protein Binding Process.

Authors:  Chuanying Chen; B Montgomery Pettitt
Journal:  Biophys J       Date:  2016-02-02       Impact factor: 4.033

3.  Frustration in protein-DNA binding influences conformational switching and target search kinetics.

Authors:  Amir Marcovitz; Yaakov Levy
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-14       Impact factor: 11.205

4.  Searching target sites on DNA by proteins: Role of DNA dynamics under confinement.

Authors:  Anupam Mondal; Arnab Bhattacherjee
Journal:  Nucleic Acids Res       Date:  2015-09-22       Impact factor: 16.971

5.  RecA-mediated sequence homology recognition as an example of how searching speed in self-assembly systems can be optimized by balancing entropic and enthalpic barriers.

Authors:  Lili Jiang; Mara Prentiss
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-08-07

6.  Functional interplay between the RK motif and linker segment dictates Oct4-DNA recognition.

Authors:  Xiangqian Kong; Jian Liu; Lianchun Li; Liyan Yue; Lihong Zhang; Hualiang Jiang; Xin Xie; Cheng Luo
Journal:  Nucleic Acids Res       Date:  2015-04-13       Impact factor: 16.971

7.  Search by proteins for their DNA target site: 1. The effect of DNA conformation on protein sliding.

Authors:  Arnab Bhattacherjee; Yaakov Levy
Journal:  Nucleic Acids Res       Date:  2014-10-16       Impact factor: 16.971

8.  Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins.

Authors:  R Nagarajan; Shandar Ahmad; M Michael Gromiha
Journal:  Nucleic Acids Res       Date:  2013-06-20       Impact factor: 16.971

Review 9.  Molecular dynamics simulations: advances and applications.

Authors:  Adam Hospital; Josep Ramon Goñi; Modesto Orozco; Josep L Gelpí
Journal:  Adv Appl Bioinform Chem       Date:  2015-11-19

10.  A human transcription factor in search mode.

Authors:  Kevin Hauser; Bernard Essuman; Yiqing He; Evangelos Coutsias; Miguel Garcia-Diaz; Carlos Simmerling
Journal:  Nucleic Acids Res       Date:  2015-12-15       Impact factor: 16.971
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