Literature DB >> 21622852

Macromolecular assembly of polycystin-2 intracytosolic C-terminal domain.

Frederico M Ferreira1, Leandro C Oliveira, Gregory G Germino, José N Onuchic, Luiz F Onuchic.   

Abstract

Mutations in PKD2 are responsible for approximately 15% of the autosomal dominant polycystic kidney disease cases. This gene encodes polycystin-2, a calcium-permeable cation channel whose C-terminal intracytosolic tail (PC2t) plays an important role in its interaction with a number of different proteins. In the present study, we have comprehensively evaluated the macromolecular assembly of PC2t homooligomer using a series of biophysical and biochemical analyses. Our studies, based on a new delimitation of PC2t, have revealed that it is capable of assembling as a homotetramer independently of any other portion of the molecule. Our data support this tetrameric arrangement in the presence and absence of calcium. Molecular dynamics simulations performed with a modified all-atoms structure-based model supported the PC2t tetrameric assembly, as well as how different populations are disposed in solution. The simulations demonstrated, indeed, that the best-scored structures are the ones compatible with a fourfold oligomeric state. These findings clarify the structural properties of PC2t domain and strongly support a homotetramer assembly of PC2.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21622852      PMCID: PMC3116388          DOI: 10.1073/pnas.1106766108

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Probability-based protein identification by searching sequence databases using mass spectrometry data.

Authors:  D N Perkins; D J Pappin; D M Creasy; J S Cottrell
Journal:  Electrophoresis       Date:  1999-12       Impact factor: 3.535

Review 2.  Structure and regulation of voltage-gated Ca2+ channels.

Authors:  W A Catterall
Journal:  Annu Rev Cell Dev Biol       Date:  2000       Impact factor: 13.827

3.  Determination of domain structure of proteins from X-ray solution scattering.

Authors:  D I Svergun; M V Petoukhov; M H Koch
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

4.  ProDom: automated clustering of homologous domains.

Authors:  Florence Servant; Catherine Bru; Sébastien Carrère; Emmanuel Courcelle; Jérĵme Gouzy; David Peyruc; Daniel Kahn
Journal:  Brief Bioinform       Date:  2002-09       Impact factor: 11.622

5.  Polycystin-2, the protein mutated in autosomal dominant polycystic kidney disease (ADPKD), is a Ca2+-permeable nonselective cation channel.

Authors:  S González-Perrett; K Kim; C Ibarra; A E Damiano; E Zotta; M Batelli; P C Harris; I L Reisin; M A Arnaout; H F Cantiello
Journal:  Proc Natl Acad Sci U S A       Date:  2001-01-30       Impact factor: 11.205

6.  Polycystin-2 is a novel cation channel implicated in defective intracellular Ca(2+) homeostasis in polycystic kidney disease.

Authors:  P M Vassilev; L Guo; X Z Chen; Y Segal; J B Peng; N Basora; H Babakhanlou; G Cruger; M Kanazirska; E M Brown; M A Hediger; J Zhou
Journal:  Biochem Biophys Res Commun       Date:  2001-03-23       Impact factor: 3.575

7.  Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set.

Authors:  N Sreerama; R W Woody
Journal:  Anal Biochem       Date:  2000-12-15       Impact factor: 3.365

8.  Polycystin-2 is an intracellular calcium release channel.

Authors:  Peter Koulen; Yiqiang Cai; Lin Geng; Yoshiko Maeda; Sayoko Nishimura; Ralph Witzgall; Barbara E Ehrlich; Stefan Somlo
Journal:  Nat Cell Biol       Date:  2002-03       Impact factor: 28.824

9.  Proteins at work: a combined small angle X-RAY scattering and theoretical determination of the multiple structures involved on the protein kinase functional landscape.

Authors:  Michael A Jamros; Leandro C Oliveira; Paul C Whitford; José N Onuchic; Joseph A Adams; Donald K Blumenthal; Patricia A Jennings
Journal:  J Biol Chem       Date:  2010-08-26       Impact factor: 5.157

10.  An HMM model for coiled-coil domains and a comparison with PSSM-based predictions.

Authors:  Mauro Delorenzi; Terry Speed
Journal:  Bioinformatics       Date:  2002-04       Impact factor: 6.937

View more
  7 in total

1.  SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale.

Authors:  Vassili Piiadov; Evandro Ares de Araújo; Mario Oliveira Neto; Aldo Felix Craievich; Igor Polikarpov
Journal:  Protein Sci       Date:  2018-12-13       Impact factor: 6.725

Review 2.  Ion channels in renal disease.

Authors:  Ivana Y Kuo; Barbara E Ehrlich
Journal:  Chem Rev       Date:  2012-07-18       Impact factor: 60.622

Review 3.  Structural studies of the C-terminal tail of polycystin-2 (PC2) reveal insights into the mechanisms used for the functional regulation of PC2.

Authors:  Yifei Yang; Barbara E Ehrlich
Journal:  J Physiol       Date:  2016-04-27       Impact factor: 5.182

Review 4.  Polycystin-1: a master regulator of intersecting cystic pathways.

Authors:  Sorin V Fedeles; Anna-Rachel Gallagher; Stefan Somlo
Journal:  Trends Mol Med       Date:  2014-01-31       Impact factor: 11.951

5.  Oligomerization of the polycystin-2 C-terminal tail and effects on its Ca2+-binding properties.

Authors:  Yifei Yang; Camille Keeler; Ivana Y Kuo; Elias J Lolis; Barbara E Ehrlich; Michael E Hodsdon
Journal:  J Biol Chem       Date:  2015-02-25       Impact factor: 5.157

Review 6.  Cyst growth, polycystins, and primary cilia in autosomal dominant polycystic kidney disease.

Authors:  Seung Hun Lee; Stefan Somlo
Journal:  Kidney Res Clin Pract       Date:  2014-06-14

Review 7.  Recent advances in understanding ion transport mechanisms in polycystic kidney disease.

Authors:  Anastasia V Sudarikova; Valeriia Y Vasileva; Regina F Sultanova; Daria V Ilatovskaya
Journal:  Clin Sci (Lond)       Date:  2021-11-12       Impact factor: 6.124

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.