Literature DB >> 21616814

Development of SSR markers from Citrus clementina (Rutaceae) BAC end sequences and interspecific transferability in Citrus.

Frédérique Ollitrault1, Javier Terol, Jose Antonio Pina, Luis Navarro, Manuel Talon, Patrick Ollitrault.   

Abstract

PREMISE OF THE STUDY: Microsatellite primers were developed from bacterial artificial chromosome (BAC) end sequences of Citrus clementina and their transferability and polymorphism tested in the genus Citrus for future anchorage of physical and genetic maps and comparative interspecific genetic mapping. • METHODS AND
RESULTS: Using PAGE and DNA silver staining, 79 primer pairs were selected for their transferability and polymorphism among 526 microsatellites mined in BES. A preliminary diversity study in Citrus was conducted with 18 of them, in C. reticulata, C. maxima, C. medica, C. sinensis, C. aurantium, C. paradisi, C. lemon, C. aurantifolia, and some papedas (wild citrus), using a capillary electrophoresis fragment analyzer. Intra- and interspecific polymorphism was observed, and heterozygous markers were identified for the different genotypes to be used for genetic mapping. •
CONCLUSIONS: These results indicate the utility of the developed primers for comparative mapping studies and the integration of physical and genetic maps.

Entities:  

Year:  2010        PMID: 21616814     DOI: 10.3732/ajb.1000280

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  26 in total

1.  Comparative use of InDel and SSR markers in deciphering the interspecific structure of cultivated citrus genetic diversity: a perspective for genetic association studies.

Authors:  Andrés García-Lor; François Luro; Luis Navarro; Patrick Ollitrault
Journal:  Mol Genet Genomics       Date:  2011-12-11       Impact factor: 3.291

2.  A nuclear phylogenetic analysis: SNPs, indels and SSRs deliver new insights into the relationships in the 'true citrus fruit trees' group (Citrinae, Rutaceae) and the origin of cultivated species.

Authors:  Andres Garcia-Lor; Franck Curk; Hager Snoussi-Trifa; Raphael Morillon; Gema Ancillo; François Luro; Luis Navarro; Patrick Ollitrault
Journal:  Ann Bot       Date:  2012-10-26       Impact factor: 4.357

3.  Inheritance in doubled-diploid clementine and comparative study with SDR unreduced gametes of diploid clementine.

Authors:  P Aleza; J Cuenca; J Juárez; L Navarro; P Ollitrault
Journal:  Plant Cell Rep       Date:  2016-04-02       Impact factor: 4.570

4.  Origin of C. latifolia and C. aurantiifolia triploid limes: the preferential disomic inheritance of doubled-diploid 'Mexican' lime is consistent with an interploid hybridization hypothesis.

Authors:  H Rouiss; F Bakry; Y Froelicher; L Navarro; P Aleza; P Ollitrault
Journal:  Ann Bot       Date:  2018-03-05       Impact factor: 4.357

5.  Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes.

Authors:  Tokurou Shimizu; Akira Kitajima; Keisuke Nonaka; Terutaka Yoshioka; Satoshi Ohta; Shingo Goto; Atsushi Toyoda; Asao Fujiyama; Takako Mochizuki; Hideki Nagasaki; Eli Kaminuma; Yasukazu Nakamura
Journal:  PLoS One       Date:  2016-11-30       Impact factor: 3.240

6.  Evidence for non-disomic inheritance in a Citrus interspecific tetraploid somatic hybrid between C. reticulata and C. limon using SSR markers and cytogenetic analysis.

Authors:  Mourad Kamiri; Marc Stift; Ikbal Srairi; Gilles Costantino; Abdelhamid El Moussadik; Abdelaziz Hmyene; Frédéric Bakry; Patrick Ollitrault; Yann Froelicher
Journal:  Plant Cell Rep       Date:  2011-03-16       Impact factor: 4.570

7.  Exploiting BAC-end sequences for the mining, characterization and utility of new short sequences repeat (SSR) markers in Citrus.

Authors:  Manosh Kumar Biswas; Lijun Chai; Christoph Mayer; Qiang Xu; Wenwu Guo; Xiuxin Deng
Journal:  Mol Biol Rep       Date:  2011-12-15       Impact factor: 2.316

8.  Enrichment of genomic resources and identification of simple sequence repeats from medicinally important Clausena excavata.

Authors:  Doo Young Bae; Sang Mi Eum; Sang Woo Lee; Jin-Hyub Paik; Soo-Yong Kim; Mihyun Park; Changyoung Lee; The Bach Tran; Van Hai Do; Jae-Yun Heo; Eun-Soo Seong; Il-Seop Kim; Ki-Young Choi; Jin Sung Hong; Rahul Vasudeo Ramekar; Sangho Choi; Jong-Kuk Na
Journal:  3 Biotech       Date:  2018-02-15       Impact factor: 2.406

9.  High resolution melting analysis is a more sensitive and effective alternative to gel-based platforms in analysis of SSR--an example in citrus.

Authors:  Gaetano Distefano; Marco Caruso; Stefano La Malfa; Alessandra Gentile; Shu-Biao Wu
Journal:  PLoS One       Date:  2012-08-30       Impact factor: 3.240

10.  A reference genetic map of C. clementina hort. ex Tan.; citrus evolution inferences from comparative mapping.

Authors:  Patrick Ollitrault; Javier Terol; Chunxian Chen; Claire T Federici; Samia Lotfy; Isabelle Hippolyte; Frédérique Ollitrault; Aurélie Bérard; Aurélie Chauveau; Jose Cuenca; Gilles Costantino; Yildiz Kacar; Lisa Mu; Andres Garcia-Lor; Yann Froelicher; Pablo Aleza; Anne Boland; Claire Billot; Luis Navarro; François Luro; Mikeal L Roose; Frederick G Gmitter; Manuel Talon; Dominique Brunel
Journal:  BMC Genomics       Date:  2012-11-05       Impact factor: 3.969

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