Literature DB >> 21616806

Phylogeny and a new tribal classification of the Panicoideae s.l. (Poaceae) based on plastid and nuclear sequence data and structural data.

J Gabriel Sánchez-Ken1, Lynn G Clark.   

Abstract

PREMISE OF THE STUDY: The subfamily Panicoideae (Poaceae) encompasses nearly one-third of the diversity of grass species, including important crops such as maize and sugarcane. Previous analyses recovered strong support for a Panicoideae+Centothecoideae lineage within the diverse Panicoideae+Arundinoideae+Chloridoideae+Micrairoideae+Aristidoideae+Danthonioideae (PACMAD) clade, although support for internal relationships was inconsistent. The objectives of this research were to (1) further test the monophyly of each subfamily and previously recovered clades within the Panicoideae+Centothecoideae lineage, (2) establish phylogenetic relationships among these groups, and (3) propose a new tribal classification for this lineage based explicitly on the phylogeny. •
METHODS: Maximum parsimony and Bayesian inference analyses of 37 taxa were based on previously published sequences (ndhF and rpl16 intron) and on new plastid and nuclear (rbcL and granule-bound starch synthase I) sequence data as well as structural data. • Key results. The Panicoideae+Centothecoideae lineage and a majority of the clades identified in previous analyses continue to be robustly supported, but resolution along the backbone of the topology remains elusive. Support for the monophyly of both subfamilies was lacking although support values for some clades increased. The tribes Centotheceae and Arundinelleae were confirmed as polyphyletic. •
CONCLUSIONS: Subfamily Centothecoideae is formally submerged into the Panicoideae, and a new tribal classification for the expanded Panicoideae is proposed based explicitly on the phylogeny. This classification includes 12 tribes of which Chasmanthieae and Zeugiteae are segretated from the Centotheceae; Tristachyideae is segregated from Arundinelleae, and a new tribe, Cyperochloeae, is validated to accommodate two isolated genera. A key to the tribes is provided.

Entities:  

Year:  2010        PMID: 21616806     DOI: 10.3732/ajb.1000024

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  10 in total

1.  Macroevolution of panicoid inflorescences: a history of contingency and order of trait acquisition.

Authors:  R Reinheimer; A C Vegetti; G H Rua
Journal:  Ann Bot       Date:  2013-03-10       Impact factor: 4.357

2.  A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions.

Authors:  Jeffery M Saarela; Sean V Burke; William P Wysocki; Matthew D Barrett; Lynn G Clark; Joseph M Craine; Paul M Peterson; Robert J Soreng; Maria S Vorontsova; Melvin R Duvall
Journal:  PeerJ       Date:  2018-02-02       Impact factor: 2.984

3.  Apospory appears to accelerate onset of meiosis and sexual embryo sac formation in sorghum ovules.

Authors:  John G Carman; Michelle Jamison; Estella Elliott; Krishna K Dwivedi; Tamara N Naumova
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4.  Resolving deep relationships of PACMAD grasses: a phylogenomic approach.

Authors:  Joseph L Cotton; William P Wysocki; Lynn G Clark; Scot A Kelchner; J Chris Pires; Patrick P Edger; Dustin Mayfield-Jones; Melvin R Duvall
Journal:  BMC Plant Biol       Date:  2015-07-11       Impact factor: 4.215

Review 5.  MicroRNAs and drought responses in sugarcane.

Authors:  Agustina Gentile; Lara I Dias; Raphael S Mattos; Thaís H Ferreira; Marcelo Menossi
Journal:  Front Plant Sci       Date:  2015-02-23       Impact factor: 5.753

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Authors:  Ya-Yi Huang; Shu-Ting Cho; Mindia Haryono; Chih-Horng Kuo
Journal:  PLoS One       Date:  2017-06-15       Impact factor: 3.240

7.  Are diversification rates and chromosome evolution in the temperate grasses (Pooideae) associated with major environmental changes in the Oligocene-Miocene?

Authors:  Manuel Pimentel; Marcial Escudero; Elvira Sahuquillo; Miguel Ángel Minaya; Pilar Catalán
Journal:  PeerJ       Date:  2017-09-22       Impact factor: 2.984

8.  DCT4-A New Member of the Dicarboxylate Transporter Family in C4 Grasses.

Authors:  Sarit Weissmann; Pu Huang; Madeline A Wiechert; Koki Furuyama; Thomas P Brutnell; Mitsutaka Taniguchi; James C Schnable; Todd C Mockler
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Review 9.  An Overview of the Genetics and Genomics of the Urochloa Species Most Commonly Used in Pastures.

Authors:  Rebecca Caroline Ulbricht Ferreira; Aline da Costa Lima Moraes; Lucimara Chiari; Rosangela Maria Simeão; Bianca Baccili Zanotto Vigna; Anete Pereira de Souza
Journal:  Front Plant Sci       Date:  2021-12-13       Impact factor: 5.753

10.  Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae).

Authors:  Sean V Burke; William P Wysocki; Fernando O Zuloaga; Joseph M Craine; J Chris Pires; Patrick P Edger; Dustin Mayfield-Jones; Lynn G Clark; Scot A Kelchner; Melvin R Duvall
Journal:  BMC Plant Biol       Date:  2016-06-18       Impact factor: 4.215

  10 in total

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