Literature DB >> 21613124

Genome-specific SCAR markers help solve taxonomy issues: a case study with Sinapis arvensis (Brassiceae, Brassicaceae).

Artem A Pankin1, Emil E Khavkin.   

Abstract

PREMISE OF THE STUDY: Traditional taxonomy and nomenclature of Brassiceae (Brassicaceae) species do not reflect their phylogeny. Revision of the species and generic limits supported by extensive molecular data seems crucial. METHODS AND
RESULTS: Genome-specific polymorphisms extracted from non-coding and coding sequences were used to develop 14 sequence characterized amplified region (SCAR) markers specific for the Brassica B genome. These SCARs were verified against 77 accessions of six U-triangle Brassica species and used to screen 23 accessions of seven wild Brassiceae species to test for their cross-species amplification. SCARs were found in all B-genome Brassica species and also in Sinapis arvensis.
CONCLUSIONS: SCAR markers can be employed for discerning B-genome chromosomes in Brassica species and S. arvensis to reliably identify B-genome species and their natural hybrids. The combined molecular evidence supports the suggestion to revise the generic limits of Brassica and Sinapis.

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Year:  2011        PMID: 21613124     DOI: 10.3732/ajb.1000422

Source DB:  PubMed          Journal:  Am J Bot        ISSN: 0002-9122            Impact factor:   3.844


  4 in total

1.  Seed coat microsculpturing is related to genomic components in wild Brassica juncea and Sinapis arvensis.

Authors:  Ying-hao Wang; Wei Wei; Ding-ming Kang; Ke-ping Ma
Journal:  PLoS One       Date:  2013-12-30       Impact factor: 3.240

2.  Deep RNA-Seq to unlock the gene bank of floral development in Sinapis arvensis.

Authors:  Jia Liu; Desheng Mei; Yunchang Li; Shunmou Huang; Qiong Hu
Journal:  PLoS One       Date:  2014-09-05       Impact factor: 3.240

3.  SCAR Marker for Identification and Discrimination of Commiphora wightii and C. myrrha.

Authors:  Pramod Kumar Sairkar; Anjana Sharma; N P Shukla
Journal:  Mol Biol Int       Date:  2016-03-16

4.  Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species.

Authors:  Lijun Kong; Kun Zhao; Yingying Gao; Liming Miao; Chaoquan Chen; Hang Deng; Zhenning Liu; Xiaolin Yu
Journal:  BMC Genomics       Date:  2018-10-03       Impact factor: 3.969

  4 in total

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