Literature DB >> 21611661

Selectivity in DNA replication. Interplay of steric shape, hydrogen bonds, π-stacking and solvent effects.

Jordi Poater1, Marcel Swart, Célia Fonseca Guerra, F Matthias Bickelhaupt.   

Abstract

Our dispersion-corrected DFT computations reveal key factors behind the intrinsic affinity of a DNA template-primer complex to select the correct nucleotide.

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Year:  2011        PMID： 21611661     DOI： 10.1039/c0cc04707d

Source DB:  PubMed          Journal:  Chem Commun (Camb)        ISSN： 1359-7345            Impact factor:   6.222


  11 in total

1.  Measurement and theory of hydrogen bonding contribution to isosteric DNA base pairs.

Authors:  Omid Khakshoor; Steven E Wheeler; K N Houk; Eric T Kool
Journal:  J Am Chem Soc       Date:  2012-02-02       Impact factor: 15.419

2.  Molecular Mechanisms of DNA Replication and Repair Machinery: Insights from Microscopic Simulations.

Authors:  Christopher Maffeo; Han-Yi Chou; Aleksei Aksimentiev
Journal:  Adv Theory Simul       Date:  2019-02-12

3.  An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies.

Authors:  Mohit Chawla; Romina Oliva; Janusz M Bujnicki; Luigi Cavallo
Journal:  Nucleic Acids Res       Date:  2015-06-27       Impact factor: 16.971

4.  The strength of the template effect attracting nucleotides to naked DNA.

Authors:  Eric Kervio; Birgit Claasen; Ulrich E Steiner; Clemens Richert
Journal:  Nucleic Acids Res       Date:  2014-05-29       Impact factor: 16.971

Review 5.  Enzyme-free genetic copying of DNA and RNA sequences.

Authors:  Marilyne Sosson; Clemens Richert
Journal:  Beilstein J Org Chem       Date:  2018-03-12       Impact factor: 2.883

Review 6.  Could Quantum Mechanical Properties Be Reflected on Classical Molecular Dynamics? The Case of Halogenated Organic Compounds of Biological Interest.

Authors:  Lucas de Azevedo Santos; Ingrid G Prandi; Teodorico C Ramalho
Journal:  Front Chem       Date:  2019-12-13       Impact factor: 5.221

Review 7.  Understanding DNA under oxidative stress and sensitization: the role of molecular modeling.

Authors:  Elise Dumont; Antonio Monari
Journal:  Front Chem       Date:  2015-07-14       Impact factor: 5.221

8.  B-DNA Structure and Stability as Function of Nucleic Acid Composition: Dispersion-Corrected DFT Study of Dinucleoside Monophosphate Single and Double Strands.

Authors:  Giampaolo Barone; Célia Fonseca Guerra; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2013-08-16       Impact factor: 2.911

9.  Halogen Bonding versus Hydrogen Bonding: A Molecular Orbital Perspective.

Authors:  Lando P Wolters; F Matthias Bickelhaupt
Journal:  ChemistryOpen       Date:  2012-04-04       Impact factor: 2.911

10.  Unveiled electric profiles within hydrogen bonds suggest DNA base pairs with similar bond strengths.

Authors:  Y B Ruiz-Blanco; Y Almeida; C M Sotomayor-Torres; Y García
Journal:  PLoS One       Date:  2017-10-05       Impact factor: 3.240
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