Literature DB >> 21609859

The impact of ions on allosteric functions in human liver pyruvate kinase.

Aron W Fenton1, Aileen Y Alontaga.   

Abstract

Experimental designs used to monitor the magnitude of an allosteric response can greatly influence observed values. We report here the impact of buffer, monovalent cation, divalent cation, and anion on the magnitude of the allosteric regulation of the affinity of human liver pyruvate kinase (hL-PYK) for substrate, phosphoenolpyruvate (PEP). The magnitudes of the allosteric activation by fructose-1,6-bisphosphate (Fru-1,6-BP) and the allosteric inhibition by alanine are independent of most, but not all buffers tested. However, these magnitudes are dependent on whether Mg(2+) or Mn(2+) is included as the divalent cation. In the presence of Mn(2+), any change in K(app-PEP) caused by Fru-1,6-BP is minimal. hL-PYK activity does not appear to require monovalent cation. Monovalent cation binding in the active site impacts PEP affinity with minimum influence on the magnitude of allosteric coupling. However, Na(+) and Li(+) reduce the magnitude of the allosteric response to Fru-1,6-BP, likely due to mechanisms outside of the active site. Which anion is used to maintain a constant monovalent cation concentration also influences the magnitude of the allosteric response. The value of determining the impact of ions on allosteric function can be appreciated by considering that representative structures used in comparative studies have often been determined using protein crystals grown in diverse buffer and salt conditions.
Copyright © 2009 Elsevier Inc. All rights reserved.

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Year:  2009        PMID: 21609859      PMCID: PMC3105363          DOI: 10.1016/S0076-6879(09)66005-5

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  43 in total

1.  Kinetic analysis of enzyme reactions. II. The potassium activation and calcium inhibition of pyruvic phosphoferase.

Authors:  J F KACHMAR; P D BOYER
Journal:  J Biol Chem       Date:  1953-02       Impact factor: 5.157

2.  Kinetic linked-function analysis of the multiligand interactions on Mg(2+)-activated yeast pyruvate kinase.

Authors:  T J Bollenbach; T Nowak
Journal:  Biochemistry       Date:  2001-10-30       Impact factor: 3.162

Review 3.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

4.  Linked-function origins of cooperativity in a symmetrical dimer.

Authors:  G D Reinhart
Journal:  Biophys Chem       Date:  1988-06       Impact factor: 2.352

5.  The L- and R-type isozymes of rat pyruvate kinase are produced from a single gene by use of different promoters.

Authors:  T Noguchi; K Yamada; H Inoue; T Matsuda; T Tanaka
Journal:  J Biol Chem       Date:  1987-10-15       Impact factor: 5.157

6.  Pyruvate kinase revisited: the activating effect of K+.

Authors:  Jesús Oria-Hernández; Nallely Cabrera; Ruy Pérez-Montfort; Leticia Ramírez-Silva
Journal:  J Biol Chem       Date:  2005-09-07       Impact factor: 5.157

Review 7.  Pyruvate kinase: current status of regulatory and functional properties.

Authors:  Ma Enriqueta Muñoz; Elizabeth Ponce
Journal:  Comp Biochem Physiol B Biochem Mol Biol       Date:  2003-06       Impact factor: 2.231

8.  An activating interaction between the unphosphorylated n-terminus of human liver pyruvate kinase and the main body of the protein is interrupted by phosphorylation.

Authors:  Aron W Fenton; Qingling Tang
Journal:  Biochemistry       Date:  2009-05-12       Impact factor: 3.162

9.  Rat liver pyruvate kinase: influence of ligands on activity and fructose 1,6-bisphosphate binding.

Authors:  J B Blair; R G Walker
Journal:  Arch Biochem Biophys       Date:  1984-07       Impact factor: 4.013

10.  Reconciling the "old" and "new" views of protein allostery: a molecular simulation study of chemotaxis Y protein (CheY).

Authors:  Mark S Formaneck; Liang Ma; Qiang Cui
Journal:  Proteins       Date:  2006-06-01
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  19 in total

1.  Whole-protein alanine-scanning mutagenesis of allostery: A large percentage of a protein can contribute to mechanism.

Authors:  Qingling Tang; Aron W Fenton
Journal:  Hum Mutat       Date:  2017-06-16       Impact factor: 4.878

2.  Mutations in Antibody Fragments Modulate Allosteric Response Via Hydrogen-Bond Network Fluctuations.

Authors:  Amit Srivastava; Malgorzata B Tracka; Shahid Uddin; Jose Casas-Finet; Dennis R Livesay; Donald J Jacobs
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

3.  RheoScale: A tool to aggregate and quantify experimentally determined substitution outcomes for multiple variants at individual protein positions.

Authors:  Abby M Hodges; Aron W Fenton; Larissa L Dougherty; Andrew C Overholt; Liskin Swint-Kruse
Journal:  Hum Mutat       Date:  2018-08-28       Impact factor: 4.878

4.  Distinguishing the interactions in the fructose 1,6-bisphosphate binding site of human liver pyruvate kinase that contribute to allostery.

Authors:  Arjun Ishwar; Qingling Tang; Aron W Fenton
Journal:  Biochemistry       Date:  2015-02-12       Impact factor: 3.162

5.  Identification of allosteric-activating drug leads for human liver pyruvate kinase.

Authors:  Aron W Fenton
Journal:  Methods Mol Biol       Date:  2012

6.  Allosteric regulation of human liver pyruvate kinase by peptides that mimic the phosphorylated/dephosphorylated N-terminus.

Authors:  Charulata B Prasannan; Qingling Tang; Aron W Fenton
Journal:  Methods Mol Biol       Date:  2012

7.  The phosphate moiety of phosphoenolpyruvate does NOT contribute to allosteric regulation of liver pyruvate kinase by fructose-1,6-bisphosphate.

Authors:  Benjamin M Chappell; Aron W Fenton
Journal:  Arch Biochem Biophys       Date:  2020-10-16       Impact factor: 4.013

8.  Changes in the allosteric site of human liver pyruvate kinase upon activator binding include the breakage of an intersubunit cation-π bond.

Authors:  Jeffrey S McFarlane; Trey A Ronnebaum; Kathleen M Meneely; Annemarie Chilton; Aron W Fenton; Audrey L Lamb
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2019-06-10       Impact factor: 1.056

9.  The strengths and limitations of using biolayer interferometry to monitor equilibrium titrations of biomolecules.

Authors:  Chamitha J Weeramange; Max S Fairlamb; Dipika Singh; Aron W Fenton; Liskin Swint-Kruse
Journal:  Protein Sci       Date:  2020-01-23       Impact factor: 6.725

Review 10.  A critical review of the role of M2PYK in the Warburg effect.

Authors:  Robert A Harris; Aron W Fenton
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2019-01-29       Impact factor: 10.680

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