Literature DB >> 2160824

[Chemical reactions in double-stranded nucleic acids. IX. Directed introduction of substituted pyrophosphate bonds into DNA structure].

S A Kuznetsova, M G Ivanovskaia, Z A Shabarova.   

Abstract

An effective synthesis of oligodeoxyribonucleotides containing a substituted pyrophosphate bond in the definite position of the sugar-phosphate backbone has been developed by template-directed condensation of two heptanucleotides. One of them containing 5'-phosphate group to be activated and 3'-phosphate group of the other being substituted with ethoxy-, buthylamino-, morpholino- or ethyl glycinate residues. Water-soluble carbodiimide (EDAC) proved to be more efficient in the phosphate group activation than N-hydroxybenzotriazole ester (yields of substituted pyrophosphates 35-80 and 10-15% respectively). The substituted pyrophosphate bong is quite stable in neutral aqueous solution. Mild conditions of selective cleavage of this bond yielding the initial oligonucleotides were found.

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Year:  1990        PMID: 2160824

Source DB:  PubMed          Journal:  Bioorg Khim        ISSN: 0132-3423


  3 in total

1.  A new affinity reagent for the site-specific, covalent attachment of DNA to active-site nucleophiles: application to the EcoRI and RsrI restriction and modification enzymes.

Authors:  A A Purmal; Z A Shabarova; R I Gumport
Journal:  Nucleic Acids Res       Date:  1992-07-25       Impact factor: 16.971

2.  New chemically reactive dsDNAs containing single internucleotide monophosphoryldithio links: reactivity of 5'-mercapto-oligodeoxyribonucleotides.

Authors:  V G Metelev; O A Borisova; E M Volkov; T S Oretskaya; N G Dolinnaya
Journal:  Nucleic Acids Res       Date:  2001-10-01       Impact factor: 16.971

3.  Crosslinking of double-stranded oligonucleotides containing O-methyl-substituted pyrophosphate groups to the HNF1 transcription factor in nuclear cell extract.

Authors:  S A Kuznetsova; C Clusel; E Ugarte; I Elias; M Vasseur; M Blumenfeld; Z A Shabarova
Journal:  Nucleic Acids Res       Date:  1996-12-01       Impact factor: 16.971

  3 in total

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