Literature DB >> 21603088

Achieving High Performance with FPGA-Based Computing.

Martin C Herbordt1, Tom Vancourt, Yongfeng Gu, Bharat Sukhwani, Al Conti, Josh Model, Doug Disabello.   

Abstract

Numerous application areas, including bioinformatics and computational biology, demand increasing amounts of processing capability. In many cases, the computation cores and data types are suited to field-programmable gate arrays. The challenge is identifying the design techniques that can extract high performance potential from the FPGA fabric.

Year:  2007        PMID: 21603088      PMCID: PMC3098506          DOI: 10.1109/MC.2007.79

Source DB:  PubMed          Journal:  Computer (Long Beach Calif)        ISSN: 0018-9162            Impact factor:   2.683


  1 in total

1.  Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques.

Authors:  E Katchalski-Katzir; I Shariv; M Eisenstein; A A Friesem; C Aflalo; I A Vakser
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-15       Impact factor: 11.205

  1 in total
  4 in total

1.  Multiscale simulation of microbe structure and dynamics.

Authors:  Harshad Joshi; Abhishek Singharoy; Yuriy V Sereda; Srinath C Cheluvaraja; Peter J Ortoleva
Journal:  Prog Biophys Mol Biol       Date:  2011-07-23       Impact factor: 3.667

2.  Shouji: a fast and efficient pre-alignment filter for sequence alignment.

Authors:  Mohammed Alser; Hasan Hassan; Akash Kumar; Onur Mutlu; Can Alkan
Journal:  Bioinformatics       Date:  2019-11-01       Impact factor: 6.937

3.  GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.

Authors:  Mohammed Alser; Hasan Hassan; Hongyi Xin; Oguz Ergin; Onur Mutlu; Can Alkan
Journal:  Bioinformatics       Date:  2017-11-01       Impact factor: 6.937

4.  Integrating reconfigurable hardware-based grid for high performance computing.

Authors:  Julio Dondo Gazzano; Francisco Sanchez Molina; Fernando Rincon; Juan Carlos López
Journal:  ScientificWorldJournal       Date:  2015-03-22
  4 in total

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