Literature DB >> 21602327

Genome sequence of strain IMCC2047, a novel marine member of the Gammaproteobacteria.

Ilnam Kang1, Dongmin Kang, Hyun-Myung Oh, Hana Kim, Hee-Jin Kim, Tae-Wook Kang, Seon-Young Kim, Jang-Cheon Cho.   

Abstract

Strain IMCC2047 was isolated from the Yellow Sea using dilution-to-extinction culturing. The strain was shown to occupy a distinct phylogenetic position within the Gammaproteobacteria. Here we present the genome sequence of strain IMCC2047, which harbors genes for various metabolic pathways, including proteorhodopsin and ribulose bisphosphate carboxylase.

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Year:  2011        PMID： 21602327      PMCID： PMC3133339          DOI： 10.1128/JB.05226-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  13 in total

1.  Bacterial rhodopsin: evidence for a new type of phototrophy in the sea.

Authors:  O Béjà; L Aravind; E V Koonin; M T Suzuki; A Hadd; L P Nguyen; S B Jovanovich; C M Gates; R A Feldman; J L Spudich; E N Spudich; E F DeLong
Journal:  Science       Date:  2000-09-15       Impact factor: 47.728

2.  Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria.

Authors:  Jang-Cheon Cho; Stephen J Giovannoni
Journal:  Appl Environ Microbiol       Date:  2004-01       Impact factor: 4.792

3.  BLAST: at the core of a powerful and diverse set of sequence analysis tools.

Authors:  Scott McGinnis; Thomas L Madden
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

4.  Microbial community composition of the Danshui river estuary of Northern Taiwan and the practicality of the phylogenetic method in microbial barcoding.

Authors:  Pei-Chun Liao; Bing-Hong Huang; Shong Huang
Journal:  Microb Ecol       Date:  2007-02-22       Impact factor: 4.552

5.  Velvet: algorithms for de novo short read assembly using de Bruijn graphs.

Authors:  Daniel R Zerbino; Ewan Birney
Journal:  Genome Res       Date:  2008-03-18       Impact factor: 9.043

Review 6.  Proteorhodopsins: an array of physiological roles?

Authors:  Jed A Fuhrman; Michael S Schwalbach; Ulrich Stingl
Journal:  Nat Rev Microbiol       Date:  2008-05-13       Impact factor: 60.633

7.  Proteorhodopsin in the ubiquitous marine bacterium SAR11.

Authors:  Stephen J Giovannoni; Lisa Bibbs; Jang-Cheon Cho; Martha D Stapels; Russell Desiderio; Kevin L Vergin; Michael S Rappé; Samuel Laney; Lawrence J Wilhelm; H James Tripp; Eric J Mathur; Douglas F Barofsky
Journal:  Nature       Date:  2005-11-03       Impact factor: 49.962

8.  Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones.

Authors:  David A Walsh; Elena Zaikova; Charles G Howes; Young C Song; Jody J Wright; Susannah G Tringe; Philippe D Tortell; Steven J Hallam
Journal:  Science       Date:  2009-10-23       Impact factor: 47.728

Review 9.  Multiple Rubisco forms in proteobacteria: their functional significance in relation to CO2 acquisition by the CBB cycle.

Authors:  Murray Ronald Badger; Emily Jane Bek
Journal:  J Exp Bot       Date:  2008-02-02       Impact factor: 6.992

10.  The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific.

Authors:  Douglas B Rusch; Aaron L Halpern; Granger Sutton; Karla B Heidelberg; Shannon Williamson; Shibu Yooseph; Dongying Wu; Jonathan A Eisen; Jeff M Hoffman; Karin Remington; Karen Beeson; Bao Tran; Hamilton Smith; Holly Baden-Tillson; Clare Stewart; Joyce Thorpe; Jason Freeman; Cynthia Andrews-Pfannkoch; Joseph E Venter; Kelvin Li; Saul Kravitz; John F Heidelberg; Terry Utterback; Yu-Hui Rogers; Luisa I Falcón; Valeria Souza; Germán Bonilla-Rosso; Luis E Eguiarte; David M Karl; Shubha Sathyendranath; Trevor Platt; Eldredge Bermingham; Victor Gallardo; Giselle Tamayo-Castillo; Michael R Ferrari; Robert L Strausberg; Kenneth Nealson; Robert Friedman; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029
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  2 in total

1.  Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.

Authors:  Seung-Jo Yang; Ilnam Kang; Jang-Cheon Cho
Journal:  Microb Ecol       Date:  2015-11-14       Impact factor: 4.552

Review 2.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056
  2 in total

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